Package: fraq
Type: Package
Title: A High-Throughput and Extensible Toolkit for Processing FASTQ
        Data
Version: 1.1.1
Date: 2026-02-12
Authors@R: c(
    person("Travers", "Ching", email = "traversc@gmail.com", role = c("aut", "cre", "cph"),
        comment = c(ORCID = "0000-0002-5577-3516")),
    person("Yann", "Collet", role = c("ctb", "cph"),
        comment = "Author of the bundled zstd library"),
    person("Facebook, Inc.", role = "cph",
        comment = "Copyright holder of the bundled zstd code"),
    person("Reichardt", "Tino", role = c("ctb", "cph"),
        comment = "Contributor/copyright holder of bundled zstd code"),
    person("Skibinski", "Przemyslaw", role = c("ctb", "cph"),
        comment = "Contributor/copyright holder of bundled zstd code"),
    person("Mori", "Yuta", role = c("ctb", "cph"),
        comment = "Contributor/copyright holder of bundled zstd code"))
Description: High-throughput extensible toolkit for processing FASTQ
        data. The goal of this package is to empower users to quickly
        build out small programmatic 'kernels' to define any FASTQ
        processing task they may need. Builds on Intel TBB’s flow graph
        to orchestrate concurrent I/O and data processing; throughput
        can be as fast as compression and disk speed allows. The
        package also ships with a suite of predefined kernels for
        common FASTQ tasks.
License: GPL-3
biocViews: Software, Infrastructure, Sequencing, DNASeq,
        QualityControl, Alignment
URL: https://github.com/traversc/fraq
BugReports: https://github.com/traversc/fraq/issues
Depends: R (>= 4.5.0)
Imports: Rcpp, Biostrings, RcppParallel, edlibR, stringfish
LinkingTo: Rcpp, RcppParallel, edlibR
Suggests: knitr, rmarkdown, BiocStyle, processx, ShortRead
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
VignetteBuilder: knitr
SystemRequirements: GNU make
Copyright: This package includes code from the 'zstd' library created
        by Yann Collet and owned by Facebook, Inc.
Config/pak/sysreqs: make libicu-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-05-03 09:02:47 UTC
RemoteUrl: https://github.com/bioc/fraq
RemoteRef: HEAD
RemoteSha: d482adc4a844192ce0eed2d05967f21fa135ee69
NeedsCompilation: yes
Packaged: 2026-07-02 05:47:23 UTC; root
Author: Travers Ching [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0002-5577-3516>),
  Yann Collet [ctb, cph] (Author of the bundled zstd library),
  Facebook, Inc. [cph] (Copyright holder of the bundled zstd code),
  Reichardt Tino [ctb, cph] (Contributor/copyright holder of bundled zstd
    code),
  Skibinski Przemyslaw [ctb, cph] (Contributor/copyright holder of
    bundled zstd code),
  Mori Yuta [ctb, cph] (Contributor/copyright holder of bundled zstd
    code)
Maintainer: Travers Ching <traversc@gmail.com>