Introduction | Plotting the data: boxplots, ternary plot, bar plot | A Boxplot Example to Illustrate Multiple Groups and Point Colors | The StackedData Class | Using the StackedData Class | Acknowledgments
Package: flowPlots 1.61.0
N. Hawkins
flowPlots: flowPlots: analysis plots and data class for gated flow cytometry data
Graphical displays with embedded statistical tests for gated ICS flow cytometry data, and a data class which stores "stacked" data and has methods for computing summary measures on stacked data, such as marginal and polyfunctional degree data.
Authors:
flowPlots_1.61.0.tar.gz
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flowPlots_1.61.0.tgz(r-4.6-any)flowPlots_1.61.0.tgz(r-4.5-any)
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manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
flowPlots/json (API)
| # Install 'flowPlots' in R: |
| install.packages('flowPlots', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- adultsNeonates - The adultsNeonates example data set of "stacked" data.
- marginalDF - An example of marginalData
- markerMatrix - An example of the markers data.
- pfdDF - An example of pfdData
- pfdPartsList - An example of pfdPartsData
- profileDF - An example of profileData
On BioConductor:flowPlots-1.61.0(bioc 3.24)flowPlots-1.60.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
immunooncologyflowcytometrycellbasedassaysvisualizationdatarepresentation
Last updated from:ef7cb55ea3. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 133 | ||
| linux-devel-x86_64 | NOTE | 135 | ||
| source / vignettes | OK | 192 | ||
| linux-release-x86_64 | NOTE | 110 | ||
| macos-release-arm64 | NOTE | 98 | ||
| macos-oldrel-arm64 | NOTE | 74 | ||
| windows-devel | NOTE | 72 | ||
| windows-release | NOTE | 67 | ||
| windows-oldrel | NOTE | 74 | ||
| wasm-release | OK | 86 |
Exports:computeMarginalDatacomputeMarkerscomputePFDDatacomputePFDGroupStatsListcomputePFDPartsDatacomputeProfileDataGroupListBoxplotlegendPFDStatsGroupNamesmakeBarplotDatamakeDataListmakeTernaryDatamarginalDatamarginalData<-markersmarkers<-pfdDatapfdData<-pfdPartsDatapfdPartsData<-profileDataprofileData<-readStackedDatastackedDatastackedData<-
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| The adultsNeonates example data set of "stacked" data. | adultsNeonates |
| Method computeMarginalData from Class "StackedData" | computeMarginalData computeMarginalData,StackedData,character,character,character,character-method computeMarginalData-methods |
| Method computeMarkers from Class "StackedData" | computeMarkers computeMarkers,character,logical-method computeMarkers-methods |
| Method computePFDData from Class "StackedData" | computePFDData computePFDData,StackedData,character,character,character,character-method computePFDData-methods |
| Compute Group Stats on PFD Data to Be Used In a Legend | computePFDGroupStatsList |
| Method computePFDPartsData from Class "StackedData" | computePFDPartsData computePFDPartsData,StackedData,character,character,character,character-method computePFDPartsData-methods |
| Method computeProfileData from Class "StackedData" | computeProfileData computeProfileData,StackedData,character,character,character,character-method computeProfileData-methods |
| A Boxplot Function With Embedded Statistical Tests for Comparing Groups | GroupListBoxplot |
| Create Group Names With Embedded Stats to Use in a Plot Legend | legendPFDStatsGroupNames |
| Prepare Profile Data for a Call to Barplot() | makeBarplotData |
| Prepare Data in a Data Frame for a Call to GroupListBoxplot() | makeDataList |
| Prepare PFD Data for a Call to ternaryplot() | makeTernaryData |
| Method marginalData from Class "StackedData" | marginalData marginalData,StackedData-method marginalData-methods marginalData<- marginalData<-,StackedData-method marginalData<--methods |
| An example of marginalData | marginalDF |
| An example of the markers data. | markerMatrix |
| Method markers from Class "StackedData" | markers markers,StackedData-method markers-methods markers<- markers<-,StackedData-method markers<--methods |
| Method pfdData from Class "StackedData" | pfdData pfdData,StackedData-method pfdData-methods pfdData<- pfdData<-,StackedData-method pfdData<--methods |
| An example of pfdData | pfdDF |
| Method pfdPartsData from Class "StackedData" | pfdPartsData pfdPartsData,StackedData-method pfdPartsData-methods pfdPartsData<- pfdPartsData<-,StackedData-method pfdPartsData<--methods |
| An example of pfdPartsData | pfdPartsList |
| Method profileData from Class "StackedData" | profileData profileData,StackedData-method profileData-methods profileData<- profileData<-,StackedData-method profileData<--methods |
| An example of profileData | profileDF |
| Method readStackedData from Class "StackedData" | readStackedData readStackedData,character-method |
| Class "StackedData" | StackedData StackedData-class |
| Method stackedData from Class "StackedData" | stackedData stackedData,StackedData-method stackedData-methods stackedData<- stackedData<-,StackedData-method stackedData<--methods |