{
  "_id": "6a1ad06a1d7bb097a09e16e4",
  "Package": "flowPlots",
  "Type": "Package",
  "Version": "1.61.0",
  "Title": "flowPlots: analysis plots and data class for gated flow\ncytometry data",
  "Description": "Graphical displays with embedded statistical tests for\ngated ICS flow cytometry data, and a data class which stores\n\"stacked\" data and has methods for computing summary measures\non stacked data, such as marginal and polyfunctional degree\ndata.",
  "Author": "N. Hawkins, S. Self",
  "Maintainer": "N. Hawkins <hawkins@fhcrc.org>",
  "LazyData": "yes",
  "License": "Artistic-2.0",
  "biocViews": "ImmunoOncology, FlowCytometry, CellBasedAssays,\nVisualization, DataRepresentation",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:14 UTC",
  "RemoteUrl": "https://github.com/bioc/flowPlots",
  "RemoteRef": "HEAD",
  "RemoteSha": "ef7cb55ea36126aeb25742f08ae38c2039b08113",
  "NeedsCompilation": "no",
  "Packaged": {
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    "User": "root"
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  "_user": "bioc",
  "_type": "src",
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  "_published": "2026-05-30T11:56:26.688Z",
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    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
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    "visualization",
    "datarepresentation"
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  "_userbio": {
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    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
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    "computeMarkers",
    "computePFDData",
    "computePFDGroupStatsList",
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    "computeProfileData",
    "GroupListBoxplot",
    "legendPFDStatsGroupNames",
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    "markers<-",
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    "pfdPartsData<-",
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    "profileData<-",
    "readStackedData",
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    "stackedData<-"
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      "title": "The adultsNeonates example data set of \"stacked\" data.",
      "object": "adultsNeonates",
      "class": [
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        "group",
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        "cytCombo"
      ],
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      "tojson": true
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      "title": "An example of marginalData",
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      "class": [
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      ],
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        "subjectId",
        "group"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "markerMatrix",
      "title": "An example of the markers data.",
      "object": "markerMatrix",
      "class": [
        "matrix",
        "array"
      ],
      "fields": [
        "TNFa",
        "IL6",
        "IL12",
        "IFNa"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "pfdDF",
      "title": "An example of pfdData",
      "object": "pfdDF",
      "class": [
        "data.frame"
      ],
      "fields": [
        "PFD1",
        "PFD2",
        "PFD3",
        "PFD4",
        "stim",
        "concGroup",
        "cell",
        "groups",
        "subjectId",
        "group"
      ],
      "rows": 432,
      "table": true,
      "tojson": true
    },
    {
      "name": "pfdPartsList",
      "title": "An example of pfdPartsData",
      "object": "pfdPartsList",
      "class": [
        "list"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
    {
      "name": "profileDF",
      "title": "An example of profileData",
      "object": "profileDF",
      "class": [
        "data.frame"
      ],
      "fields": [
        "TNFa+IL6+IL12+IFNa+",
        "TNFa+IL6+IL12+IFNa-",
        "TNFa+IL6+IL12-IFNa+",
        "TNFa+IL6+IL12-IFNa-",
        "TNFa+IL6-IL12+IFNa+",
        "TNFa+IL6-IL12+IFNa-",
        "TNFa+IL6-IL12-IFNa+",
        "TNFa+IL6-IL12-IFNa-",
        "TNFa-IL6+IL12+IFNa+",
        "TNFa-IL6+IL12+IFNa-",
        "TNFa-IL6+IL12-IFNa+",
        "TNFa-IL6+IL12-IFNa-",
        "TNFa-IL6-IL12+IFNa+",
        "TNFa-IL6-IL12+IFNa-",
        "TNFa-IL6-IL12-IFNa+",
        "TNFa-IL6-IL12-IFNa-",
        "stim",
        "concGroup",
        "cell",
        "groups",
        "subjectId",
        "group"
      ],
      "rows": 432,
      "table": true,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "adultsNeonates",
      "title": "The adultsNeonates example data set of \"stacked\" data.",
      "topics": [
        "adultsNeonates"
      ]
    },
    {
      "page": "computeMarginalData-methods",
      "title": "Method computeMarginalData from Class \"StackedData\"",
      "topics": [
        "computeMarginalData",
        "computeMarginalData,StackedData,character,character,character,character-method",
        "computeMarginalData-methods"
      ]
    },
    {
      "page": "computeMarkers-methods",
      "title": "Method computeMarkers from Class \"StackedData\"",
      "topics": [
        "computeMarkers",
        "computeMarkers,character,logical-method",
        "computeMarkers-methods"
      ]
    },
    {
      "page": "computePFDData-methods",
      "title": "Method computePFDData from Class \"StackedData\"",
      "topics": [
        "computePFDData",
        "computePFDData,StackedData,character,character,character,character-method",
        "computePFDData-methods"
      ]
    },
    {
      "page": "computePFDGroupStatsList",
      "title": "Compute Group Stats on PFD Data to Be Used In a Legend",
      "topics": [
        "computePFDGroupStatsList"
      ]
    },
    {
      "page": "computePFDPartsData-methods",
      "title": "Method computePFDPartsData from Class \"StackedData\"",
      "topics": [
        "computePFDPartsData",
        "computePFDPartsData,StackedData,character,character,character,character-method",
        "computePFDPartsData-methods"
      ]
    },
    {
      "page": "computeProfileData-methods",
      "title": "Method computeProfileData from Class \"StackedData\"",
      "topics": [
        "computeProfileData",
        "computeProfileData,StackedData,character,character,character,character-method",
        "computeProfileData-methods"
      ]
    },
    {
      "page": "GroupListBoxplot",
      "title": "A Boxplot Function With Embedded Statistical Tests for Comparing Groups",
      "topics": [
        "GroupListBoxplot"
      ]
    },
    {
      "page": "legendPFDStatsGroupNames",
      "title": "Create Group Names With Embedded Stats to Use in a Plot Legend",
      "topics": [
        "legendPFDStatsGroupNames"
      ]
    },
    {
      "page": "makeBarplotData",
      "title": "Prepare Profile Data for a Call to Barplot()",
      "topics": [
        "makeBarplotData"
      ]
    },
    {
      "page": "makeDataList",
      "title": "Prepare Data in a Data Frame for a Call to GroupListBoxplot()",
      "topics": [
        "makeDataList"
      ]
    },
    {
      "page": "makeTernaryData",
      "title": "Prepare PFD Data for a Call to ternaryplot()",
      "topics": [
        "makeTernaryData"
      ]
    },
    {
      "page": "marginalData-methods",
      "title": "Method marginalData from Class \"StackedData\"",
      "topics": [
        "marginalData",
        "marginalData,StackedData-method",
        "marginalData-methods",
        "marginalData<-",
        "marginalData<-,StackedData-method",
        "marginalData<--methods"
      ]
    },
    {
      "page": "marginalDF",
      "title": "An example of marginalData",
      "topics": [
        "marginalDF"
      ]
    },
    {
      "page": "markerMatrix",
      "title": "An example of the markers data.",
      "topics": [
        "markerMatrix"
      ]
    },
    {
      "page": "markers-methods",
      "title": "Method markers from Class \"StackedData\"",
      "topics": [
        "markers",
        "markers,StackedData-method",
        "markers-methods",
        "markers<-",
        "markers<-,StackedData-method",
        "markers<--methods"
      ]
    },
    {
      "page": "pfdData-methods",
      "title": "Method pfdData from Class \"StackedData\"",
      "topics": [
        "pfdData",
        "pfdData,StackedData-method",
        "pfdData-methods",
        "pfdData<-",
        "pfdData<-,StackedData-method",
        "pfdData<--methods"
      ]
    },
    {
      "page": "pfdDF",
      "title": "An example of pfdData",
      "topics": [
        "pfdDF"
      ]
    },
    {
      "page": "pfdPartsData-methods",
      "title": "Method pfdPartsData from Class \"StackedData\"",
      "topics": [
        "pfdPartsData",
        "pfdPartsData,StackedData-method",
        "pfdPartsData-methods",
        "pfdPartsData<-",
        "pfdPartsData<-,StackedData-method",
        "pfdPartsData<--methods"
      ]
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    {
      "page": "pfdPartsList",
      "title": "An example of pfdPartsData",
      "topics": [
        "pfdPartsList"
      ]
    },
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      "page": "profileData-methods",
      "title": "Method profileData from Class \"StackedData\"",
      "topics": [
        "profileData",
        "profileData,StackedData-method",
        "profileData-methods",
        "profileData<-",
        "profileData<-,StackedData-method",
        "profileData<--methods"
      ]
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      "page": "profileDF",
      "title": "An example of profileData",
      "topics": [
        "profileDF"
      ]
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      "title": "Method readStackedData from Class \"StackedData\"",
      "topics": [
        "readStackedData",
        "readStackedData,character-method"
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      "title": "Class \"StackedData\"",
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        "StackedData-class"
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        "stackedData,StackedData-method",
        "stackedData-methods",
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