Object construction
Package: fission 1.33.0
Michael Love
fission: RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.
This package provides a RangedSummarizedExperiment object of read counts in genes for a time course RNA-Seq experiment of fission yeast (Schizosaccharomyces pombe) in response to oxidative stress (1M sorbitol treatment) at 0, 15, 30, 60, 120 and 180 mins. The samples are further divided between a wild-type group and a group with deletion of atf21. The read count matrix was prepared and provided by the author of the study: Leong HS, Dawson K, Wirth C, Li Y, Connolly Y, Smith DL, Wilkinson CR, Miller CJ. "A global non-coding RNA system modulates fission yeast protein levels in response to stress". Nat Commun 2014 May 23;5:3947. PMID: 24853205. GEO: GSE56761.
Authors:
fission_1.33.0.tar.gz
fission_1.33.0.tar.gz(r-4.7-any)fission_1.33.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
fission/json (API)
| # Install 'fission' in R: |
| install.packages('fission', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- fission - Fission yeast time course
On BioConductor:fission-1.33.0(data/experiment 3.24)fission-1.32.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatagenomesaccharomyces_cerevisiae_datasequencingdatarnaseqdatageodatapkg
Last updated from:a0a3080dda. Checks:1 ERROR, 3 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 119 | ||
| linux-devel | OK | 182 | ||
| source / vignettes | OK | 207 | ||
| linux-release | OK | 176 |
Exports:
Dependencies:abindBiobaseBiocGenericsDelayedArraygenericsGenomicRangesIRangeslatticeMatrixMatrixGenericsmatrixStatsS4ArraysS4VectorsSeqinfoSparseArraySummarizedExperimentXVector
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Fission yeast time course | fission |