Package: faers 1.1.3

Yun Peng

faers: R interface for FDA Adverse Event Reporting System

The FDA Adverse Event Reporting System (FAERS) is a database used for the spontaneous reporting of adverse events and medication errors related to human drugs and therapeutic biological products. faers pacakge serves as the interface between the FAERS database and R. Furthermore, faers pacakge offers a standardized approach for performing pharmacovigilance analysis.

Authors:Yun Peng [aut, cre], YuXuan Song [aut], Caipeng Qin [aut], JiaXing Lin [aut]

faers_1.1.3.tar.gz
faers_1.1.3.zip(r-4.5)faers_1.1.3.zip(r-4.4)faers_1.1.3.zip(r-4.3)
faers_1.1.3.tgz(r-4.4-any)faers_1.1.3.tgz(r-4.3-any)
faers_1.1.3.tar.gz(r-4.5-noble)faers_1.1.3.tar.gz(r-4.4-noble)
faers_1.1.3.tgz(r-4.4-emscripten)faers_1.1.3.tgz(r-4.3-emscripten)
faers.pdf |faers.html✨
faers/json (API)
NEWS

# Install 'faers' in R:

install.packages('faers', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/yunuuuu/faers/issues

On BioConductor:faers-1.1.0(bioc 3.20)faers-1.0.0(bioc 3.19)

bioconductor-package

44 exports 1 stars 1.58 score 70 dependencies

Last updated 8 days agofrom:be24d915f3

Exports:athena faers faers_available faers_before_period faers_clearcache faers_combine faers_counts faers_data faers_dedup faers_deleted_cases faers_download faers_filter faers_get faers_header faers_keep faers_load faers_meddra faers_merge faers_meta faers_mget faers_modify faers_parse faers_period faers_phv_signal faers_phv_table faers_primaryid faers_quarter faers_standardize faers_year fda_drugs meddra meddra_hierarchy meddra_smq meddra_version phv_bcpnn_mcmc phv_bcpnn_norm phv_chisq phv_ebgm phv_fisher phv_obsexp_shrink phv_prr phv_ror phv_signal show

Dependencies:askpass BH BiocParallel bit bit64 brio cli coda codetools colorspace cpp11 crayon curl data.table fansi farver formatR futile.logger futile.options ggplot2 glue gtable hms httr httr2 isoband jsonlite labeling lambda.r lattice lifecycle magrittr MASS Matrix MatrixModels mcmc MCMCpack mgcv mime munsell nlme openEBGM openssl pillar pkgconfig prettyunits progress quantreg R6 rappdirs RColorBrewer rlang rvest scales selectr snow SparseM stringi stringr survival sys tibble tidyselect tzdb utf8 vctrs viridisLite vroom withr xml2

FAERS-Pharmacovigilance

Rendered fromFAERS-Pharmacovigilance.Rmdusingknitr::rmarkdownon Jul 03 2024.

Last update: 2024-07-02
Started: 2023-11-01

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Read and Parse ATHENA VOCABULARIES data	athena
Download and parse FAERS Quarterly Data files	faers
Check if FAERS year	faers_available
Test whether years and quarters are before specified period	faers_before_period
Remove caches	faers_clearcache
Combine FAERS objects from different Quarterly files.	faers_combine
Counting the number of unique case for each event	faers_counts faers_counts,FAERSascii-method
Tidy up FAERS Quarterly Data with duplicate records removed	faers_dedup faers_dedup,ANY-method faers_dedup,FAERSascii-method faers_dedup,FAERSxml-method
Download FAERS data	faers_download
Methods for FAERS class	$,FAERSascii-method faers_filter faers_filter,FAERSascii-method faers_get faers_get,FAERSascii-method faers_keep faers_keep,FAERSascii-method faers_mget faers_mget,FAERSascii-method faers_modify faers_modify,FAERSascii-method faers_primaryid faers_primaryid,FAERSascii-method [,FAERSascii,ANY,ANY,ANY-method [,FAERSascii-method [[,FAERSascii-method
Load data attached in faers package	faers_load
Merge all FAERS field data into one	faers_merge faers_merge,ANY-method faers_merge,FAERSascii-method faers_merge,FAERSxml-method
List of FAERS data	faers_meta
Parse FAERS Quarterly Data	faers_parse
Create contingency table and run disproportionality analysis	faers_phv_signal faers_phv_signal,FAERSascii-method faers_phv_table faers_phv_table,FAERSascii,FAERSascii,missing-method faers_phv_table,FAERSascii,missing,FAERSascii-method
Standardize FAERS Quarterly Data for Preferred Term and drug names	faers_standardize faers_standardize,FAERSascii-method
FAERS class	FAERS FAERS-class FAERSascii FAERSascii-class FAERSxml FAERSxml-class faers_data faers_data,FAERS-method faers_deleted_cases faers_deleted_cases,FAERSascii-method faers_field faers_header faers_header,FAERSxml-method faers_meddra faers_meddra,FAERS-method faers_period faers_period,FAERS-method faers_quarter faers_quarter,FAERS-method faers_year faers_year,FAERS-method show,FAERS-method show,FAERSascii-method
Read and Parse Drugs@FDA data	fda_drugs
MedDRA class	MedDRA meddra MedDRA-class meddra_hierarchy meddra_hierarchy,MedDRA-method meddra_smq meddra_smq,MedDRA-method meddra_version meddra_version,MedDRA-method show,MedDRA-method
Pharmacovigilance Analysis	phv_bcpnn_mcmc phv_bcpnn_norm phv_chisq phv_ebgm phv_fisher phv_obsexp_shrink phv_prr phv_ror phv_signal