{
  "_id": "6a494e89f6c47c441949a249",
  "Package": "faers",
  "Title": "R interface for FDA Adverse Event Reporting System",
  "Version": "1.9.0",
  "Authors@R": "c(\nperson(\"Yun\", \"Peng\", , \"yunyunp96@163.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2801-3332\")),\nperson(\"YuXuan\", \"Song\", , \"yuxuan_song2021@163.com\", role = \"aut\"),\nperson(\"Caipeng\", \"Qin\", , \"qincaipeng@pkuph.edu.cn\", role = \"aut\"),\nperson(\"JiaXing\", \"Lin\", , \"1570851599@qq.com\", role = \"aut\")\n)",
  "BugReports": "https://github.com/WangLabCSU/faers",
  "Description": "The FDA Adverse Event Reporting System (FAERS) is a\ndatabase used for the spontaneous reporting of adverse events\nand medication errors related to human drugs and therapeutic\nbiological products. faers pacakge serves as the interface\nbetween the FAERS database and R. Furthermore, faers pacakge\noffers a standardized approach for performing pharmacovigilance\nanalysis.",
  "License": "MIT + file LICENSE",
  "biocViews": "Software, DataImport, BiomedicalInformatics,\nPharmacogenomics, Pharmacogenomics",
  "Encoding": "UTF-8",
  "ByteCompile": "true",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "Config/testthat/edition": "3",
  "Config/testthat/parallel": "true",
  "VignetteBuilder": "knitr",
  "Collate": "'athena.R' 'available.R' 'meddra.R' 'class-FAERS.R'\n'combine.R' 'counts.R' 'dedup.R' 'download.R' 'faers-package.R'\n'faers.R' 'fda_drugs.R' 'import-standalone-assert.R'\n'import-standalone-cli.R' 'import-standalone-obj-type.R'\n'import-standalone-pkg.R' 'load.R' 'merge.R' 'meta.R'\n'methods-FAERS.R' 'parse.R' 'period.R' 'phv_.R' 'phv_ebgm.R'\n'rxnorm.R' 'sample.R' 'signal.R' 'standardize.R' 'unify.R'\n'utils-assert.R' 'utils-file.R' 'utils-str.R' 'utils.R'",
  "Config/pak/sysreqs": "libxml2-dev libssl-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 13:02:22 UTC",
  "RemoteUrl": "https://github.com/bioc/faers",
  "RemoteRef": "HEAD",
  "RemoteSha": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-07-03 23:40:53 UTC",
    "User": "root"
  },
  "Author": "Yun Peng [aut, cre] (ORCID: <https://orcid.org/0000-0003-2801-3332>),\nYuXuan Song [aut],\nCaipeng Qin [aut],\nJiaXing Lin [aut]",
  "Maintainer": "Yun Peng <yunyunp96@163.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "faers_1.9.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/1307a4d9f1307f8ec5f5b9353bc9ffd057940d2029abc1144fd230b86de139b5",
  "_filesize": 3022026,
  "_sha256": "1307a4d9f1307f8ec5f5b9353bc9ffd057940d2029abc1144fd230b86de139b5",
  "_expires": "2026-10-12T18:18:47.000Z",
  "_created": "2026-07-03T23:40:53.000Z",
  "_published": "2026-07-04T18:18:49.432Z",
  "_bioccheck": {
    "error": 1,
    "warning": 0,
    "note": 9
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281",
  "_status": "success",
  "_upstream": "https://github.com/bioc/faers",
  "_commit": {
    "id": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381342
  },
  "_maintainer": {
    "name": "Yun Peng",
    "email": "yunyunp96@163.com",
    "orcid": "0000-0003-2801-3332"
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85155653587,
      "time": 175,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "8076245824"
    },
    {
      "job": 85155653594,
      "time": 194,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "ERROR",
      "artifact": "8076248410"
    },
    {
      "job": 85155653697,
      "time": 186,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8076247300"
    },
    {
      "job": 85155653690,
      "time": 106,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8076237523"
    },
    {
      "job": 85155653596,
      "time": 85,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8076235080"
    },
    {
      "job": 85155653428,
      "time": 219,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8076223837"
    },
    {
      "job": 85155653706,
      "time": 134,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "8076240817"
    },
    {
      "job": 85155653746,
      "time": 126,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "8076240052"
    },
    {
      "job": 85155653757,
      "time": 126,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "8076240125"
    },
    {
      "job": 85155653849,
      "time": 115,
      "config": "windows-release",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "8076238718"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 3.5.0",
      "role": "Depends"
    },
    {
      "package": "BiocParallel",
      "role": "Imports"
    },
    {
      "package": "brio",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "curl",
      "version": ">= 6.0.0",
      "role": "Imports"
    },
    {
      "package": "data.table",
      "role": "Imports"
    },
    {
      "package": "httr2",
      "version": ">= 1.0.0",
      "role": "Imports"
    },
    {
      "package": "MCMCpack",
      "role": "Imports"
    },
    {
      "package": "methods",
      "role": "Imports"
    },
    {
      "package": "openEBGM",
      "role": "Imports"
    },
    {
      "package": "rlang",
      "role": "Imports"
    },
    {
      "package": "rvest",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "vroom",
      "role": "Imports"
    },
    {
      "package": "xml2",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "countrycode",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-39",
      "n": 11
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.9.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.8.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "software",
    "dataimport",
    "biomedicalinformatics",
    "pharmacogenomics",
    "adverse-events",
    "drug-safety",
    "faers",
    "faers-procedure",
    "pharmacovigilance",
    "signal-detection"
  ],
  "_stars": 47,
  "_contributors": [
    {
      "user": "maddert",
      "count": 32,
      "uuid": 148871164
    },
    {
      "user": "shixiangwang",
      "count": 10,
      "uuid": 25057508
    },
    {
      "user": "jwokaty",
      "count": 6,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 445,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/wanglabcsu/faers",
  "_searchresults": 11,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/faers.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/wanglabcsu/faers",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "athena",
    "faers",
    "faers_available",
    "faers_before_period",
    "faers_clearcache",
    "faers_combine",
    "faers_counts",
    "faers_data",
    "faers_dedup",
    "faers_deleted_cases",
    "faers_download",
    "faers_filter",
    "faers_get",
    "faers_header",
    "faers_keep",
    "faers_load",
    "faers_meddra",
    "faers_merge",
    "faers_meta",
    "faers_mget",
    "faers_modify",
    "faers_parse",
    "faers_period",
    "faers_phv_signal",
    "faers_phv_table",
    "faers_primaryid",
    "faers_quarter",
    "faers_standardize",
    "faers_year",
    "fda_drugs",
    "meddra",
    "meddra_hierarchy",
    "meddra_smq",
    "meddra_version",
    "phv_bcpnn_mcmc",
    "phv_bcpnn_norm",
    "phv_chisq",
    "phv_ebgm",
    "phv_fisher",
    "phv_obsexp_shrink",
    "phv_prr",
    "phv_ror",
    "phv_signal",
    "show"
  ],
  "_help": [
    {
      "page": "athena",
      "title": "Read and Parse ATHENA VOCABULARIES data",
      "topics": [
        "athena"
      ]
    },
    {
      "page": "faers",
      "title": "Download and parse FAERS Quarterly Data files",
      "topics": [
        "faers"
      ]
    },
    {
      "page": "faers_available",
      "title": "Check if FAERS year",
      "topics": [
        "faers_available"
      ]
    },
    {
      "page": "faers_before_period",
      "title": "Test whether years and quarters are before specified period",
      "topics": [
        "faers_before_period"
      ]
    },
    {
      "page": "faers_clearcache",
      "title": "Remove caches",
      "topics": [
        "faers_clearcache"
      ]
    },
    {
      "page": "faers_combine",
      "title": "Combine FAERS objects from different Quarterly files.",
      "topics": [
        "faers_combine"
      ]
    },
    {
      "page": "faers_counts",
      "title": "Counting the number of unique case for each event",
      "topics": [
        "faers_counts",
        "faers_counts,FAERSascii-method"
      ]
    },
    {
      "page": "faers_dedup",
      "title": "Tidy up FAERS Quarterly Data with duplicate records removed",
      "topics": [
        "faers_dedup",
        "faers_dedup,ANY-method",
        "faers_dedup,FAERSascii-method",
        "faers_dedup,FAERSxml-method"
      ]
    },
    {
      "page": "faers_download",
      "title": "Download FAERS data",
      "topics": [
        "faers_download"
      ]
    },
    {
      "page": "FAERS-methods",
      "title": "Methods for FAERS class",
      "topics": [
        "$,FAERSascii-method",
        "faers_filter",
        "faers_filter,FAERSascii-method",
        "faers_get",
        "faers_get,FAERSascii-method",
        "faers_keep",
        "faers_keep,FAERSascii-method",
        "faers_mget",
        "faers_mget,FAERSascii-method",
        "faers_modify",
        "faers_modify,FAERSascii-method",
        "faers_primaryid",
        "faers_primaryid,FAERSascii-method",
        "[,FAERSascii,ANY,ANY,ANY-method",
        "[,FAERSascii-method",
        "[[,FAERSascii-method"
      ]
    },
    {
      "page": "faers_load",
      "title": "Load data attached in faers package",
      "topics": [
        "faers_load"
      ]
    },
    {
      "page": "faers_merge",
      "title": "Merge all FAERS field data into one",
      "topics": [
        "faers_merge",
        "faers_merge,ANY-method",
        "faers_merge,FAERSascii-method",
        "faers_merge,FAERSxml-method"
      ]
    },
    {
      "page": "faers_meta",
      "title": "List of FAERS data",
      "topics": [
        "faers_meta"
      ]
    },
    {
      "page": "faers_parse",
      "title": "Parse FAERS Quarterly Data",
      "topics": [
        "faers_parse"
      ]
    },
    {
      "page": "faers_phv_signal",
      "title": "Create contingency table and run disproportionality analysis",
      "topics": [
        "faers_phv_signal",
        "faers_phv_signal,FAERSascii-method",
        "faers_phv_table",
        "faers_phv_table,FAERSascii,FAERSascii,missing-method",
        "faers_phv_table,FAERSascii,missing,FAERSascii-method"
      ]
    },
    {
      "page": "faers_standardize",
      "title": "Standardize FAERS Quarterly Data for Preferred Term and drug names",
      "topics": [
        "faers_standardize",
        "faers_standardize,FAERSascii-method"
      ]
    },
    {
      "page": "FAERS-class",
      "title": "FAERS class",
      "topics": [
        "FAERS",
        "FAERS-class",
        "FAERSascii",
        "FAERSascii-class",
        "FAERSxml",
        "FAERSxml-class",
        "faers_data",
        "faers_data,FAERS-method",
        "faers_deleted_cases",
        "faers_deleted_cases,FAERSascii-method",
        "faers_field",
        "faers_header",
        "faers_header,FAERSxml-method",
        "faers_meddra",
        "faers_meddra,FAERS-method",
        "faers_period",
        "faers_period,FAERS-method",
        "faers_quarter",
        "faers_quarter,FAERS-method",
        "faers_year",
        "faers_year,FAERS-method",
        "show,FAERS-method",
        "show,FAERSascii-method"
      ]
    },
    {
      "page": "fda_drugs",
      "title": "Read and Parse Drugs@FDA data",
      "topics": [
        "fda_drugs"
      ]
    },
    {
      "page": "MedDRA-class",
      "title": "MedDRA class",
      "topics": [
        "MedDRA",
        "meddra",
        "MedDRA-class",
        "meddra_hierarchy",
        "meddra_hierarchy,MedDRA-method",
        "meddra_smq",
        "meddra_smq,MedDRA-method",
        "meddra_version",
        "meddra_version,MedDRA-method",
        "show,MedDRA-method"
      ]
    },
    {
      "page": "phv_signal",
      "title": "Pharmacovigilance Analysis",
      "topics": [
        "phv_bcpnn_mcmc",
        "phv_bcpnn_norm",
        "phv_chisq",
        "phv_ebgm",
        "phv_fisher",
        "phv_obsexp_shrink",
        "phv_prr",
        "phv_ror",
        "phv_signal"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/faers/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "BH",
    "BiocParallel",
    "bit",
    "bit64",
    "brio",
    "cli",
    "coda",
    "codetools",
    "cpp11",
    "crayon",
    "curl",
    "data.table",
    "farver",
    "formatR",
    "futile.logger",
    "futile.options",
    "ggplot2",
    "glue",
    "gtable",
    "hms",
    "httr",
    "httr2",
    "isoband",
    "jsonlite",
    "labeling",
    "lambda.r",
    "lattice",
    "lifecycle",
    "magrittr",
    "MASS",
    "Matrix",
    "MatrixModels",
    "mcmc",
    "MCMCpack",
    "mime",
    "openEBGM",
    "openssl",
    "pillar",
    "pkgconfig",
    "prettyunits",
    "progress",
    "quantreg",
    "R6",
    "rappdirs",
    "RColorBrewer",
    "rlang",
    "rvest",
    "S7",
    "scales",
    "selectr",
    "snow",
    "SparseM",
    "survival",
    "sys",
    "tibble",
    "tidyselect",
    "tzdb",
    "utf8",
    "vctrs",
    "viridisLite",
    "vroom",
    "withr",
    "xml2"
  ],
  "_vignettes": [
    {
      "source": "FAERS-Pharmacovigilance.Rmd",
      "filename": "FAERS-Pharmacovigilance.html",
      "title": "FAERS-Pharmacovigilance",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Pharmacovigilance Analysis using FAERS",
        "Check metadata of FAERS",
        "Download and Parse quarterly data files from FAERS",
        "Standardize and De-duplication",
        "Pharmacovigilance analysis",
        "sessionInfo"
      ],
      "created": "2023-11-01 07:48:48",
      "modified": "2025-09-23 09:10:13",
      "commits": 18
    }
  ],
  "_score": 6.190611797813605,
  "_indexed": true,
  "_nocasepkg": "faers",
  "_universes": [
    "bioc",
    "wanglabcsu"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.9.0",
      "date": "2026-07-03T23:44:00.000Z",
      "distro": "resolute",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/a7191196b8864af25379efe05f945008e81723de2e91d2142f8f7989018ab037",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.9.0",
      "date": "2026-07-03T23:43:51.000Z",
      "distro": "resolute",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/af54d286638ced9af904aadee8e1b1918459289c2e497b56ddb62dfebf06bcf7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.9.0",
      "date": "2026-07-03T23:42:38.000Z",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/913ea7b4caa934cfa9f02252fb5a15faf3337bda6ed8ca6071267dca02817748",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.9.0",
      "date": "2026-07-03T23:42:20.000Z",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/9b2c617c26695bd47c4e8885f12733c5506edb858d1bd43707cb6b2abebfaeb2",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.9.0",
      "date": "2026-07-03T23:43:28.000Z",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/169deb36478ace6a3b66151c7e45b3eef6de5271a4662e0970b6db5624baf06c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.9.0",
      "date": "2026-07-03T23:42:50.000Z",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/484bfcb84ef729eadd656867ebfd5c95dad3901abbae537cb6c775601736096b",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.9.0",
      "date": "2026-07-03T23:42:46.000Z",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/58b418dc5ba882de37ac5b5c64784290734f408e0242d798a27aedd7d5a0d688",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.9.0",
      "date": "2026-07-03T23:42:31.000Z",
      "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09",
      "fileid": "https://r2.ropensci.org/064d8344568760cb8f6f9df8c8c80c5dba477f41d1c9bd909094b90bcd90da51",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28687997281"
    }
  ]
}