{ "_id": "6a1ad1921d7bb097a09e2969", "Package": "faers", "Title": "R interface for FDA Adverse Event Reporting System", "Version": "1.9.0", "Authors@R": "c(\nperson(\"Yun\", \"Peng\", , \"yunyunp96@163.com\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-2801-3332\")),\nperson(\"YuXuan\", \"Song\", , \"yuxuan_song2021@163.com\", role = \"aut\"),\nperson(\"Caipeng\", \"Qin\", , \"qincaipeng@pkuph.edu.cn\", role = \"aut\"),\nperson(\"JiaXing\", \"Lin\", , \"1570851599@qq.com\", role = \"aut\")\n)", "BugReports": "https://github.com/WangLabCSU/faers", "Description": "The FDA Adverse Event Reporting System (FAERS) is a\ndatabase used for the spontaneous reporting of adverse events\nand medication errors related to human drugs and therapeutic\nbiological products. faers pacakge serves as the interface\nbetween the FAERS database and R. Furthermore, faers pacakge\noffers a standardized approach for performing pharmacovigilance\nanalysis.", "License": "MIT + file LICENSE", "biocViews": "Software, DataImport, BiomedicalInformatics,\nPharmacogenomics, Pharmacogenomics", "Encoding": "UTF-8", "ByteCompile": "true", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/testthat/edition": "3", "Config/testthat/parallel": "true", "VignetteBuilder": "knitr", "Collate": "'athena.R' 'available.R' 'meddra.R' 'class-FAERS.R'\n'combine.R' 'counts.R' 'dedup.R' 'download.R' 'faers-package.R'\n'faers.R' 'fda_drugs.R' 'import-standalone-assert.R'\n'import-standalone-cli.R' 'import-standalone-obj-type.R'\n'import-standalone-pkg.R' 'load.R' 'merge.R' 'meta.R'\n'methods-FAERS.R' 'parse.R' 'period.R' 'phv_.R' 'phv_ebgm.R'\n'rxnorm.R' 'sample.R' 'signal.R' 'standardize.R' 'unify.R'\n'utils-assert.R' 'utils-file.R' 'utils-str.R' 'utils.R'", "Config/pak/sysreqs": "libicu-dev libxml2-dev libssl-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:02:22 UTC", "RemoteUrl": "https://github.com/bioc/faers", "RemoteRef": "HEAD", "RemoteSha": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:29:59 UTC", "User": "root" }, "Author": "Yun Peng [aut, cre] (ORCID: ),\nYuXuan Song [aut],\nCaipeng Qin [aut],\nJiaXing Lin [aut]", "Maintainer": "Yun Peng ", "MD5sum": "122ea8e69fa3abae64e79c4716c94dcb", "_user": "bioc", "_type": "src", "_file": "faers_1.9.0.tar.gz", "_fileid": "12c37be60999522a202b78c9aedf92199e76aefe45dda26a4b41cf09ed62783e", "_filesize": 3019887, "_sha256": "12c37be60999522a202b78c9aedf92199e76aefe45dda26a4b41cf09ed62783e", "_created": "2026-05-30T08:29:59.000Z", "_published": "2026-05-30T12:01:22.489Z", "_jobs": [ { "job": 78636678602, "time": 157, "config": "bioc-checks", "r": "4.6.0", "check": "ERROR", "artifact": "7306853269" }, { "job": 78636678664, "time": 215, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "ERROR", "artifact": "7306858802" }, { "job": 78636678662, "time": 259, "config": "linux-release-x86_64", "r": "4.6.0", "check": "OK", "artifact": "7306862988" }, { "job": 78636678626, "time": 83, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "OK", "artifact": "7308016089" }, { "job": 78636678611, "time": 114, "config": "macos-release-arm64", "r": "4.6.0", "check": "OK", "artifact": "7308018884" }, { "job": 78636474987, "time": 238, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7306837536" }, { "job": 78636678610, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7306850604" }, { "job": 78636678625, "time": 121, "config": "windows-devel", "r": "4.7.0", "check": "OK", "artifact": "7306849553" }, { "job": 78636678619, "time": 117, "config": "windows-oldrel", "r": "4.5.3", "check": "OK", "artifact": "7306849067" }, { "job": 78636678617, "time": 114, "config": "windows-release", "r": "4.6.0", "check": "OK", "artifact": "7306848868" } ], "_bioccheck": { "error": 1, "warning": 0, "note": 10 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/faers", "_commit": { "id": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381342 }, "_maintainer": { "name": "Yun Peng", "email": "yunyunp96@163.com", "orcid": "0000-0003-2801-3332" }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.5.0", "role": "Depends" }, { "package": "BiocParallel", "role": "Imports" }, { "package": "brio", "role": "Imports" }, { "package": "cli", "role": "Imports" }, { "package": "curl", "version": ">= 6.0.0", "role": "Imports" }, { "package": "data.table", "role": "Imports" }, { "package": "httr2", "version": ">= 1.0.0", "role": "Imports" }, { "package": "MCMCpack", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "openEBGM", "role": "Imports" }, { "package": "rlang", "role": "Imports" }, { "package": "rvest", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "utils", "role": "Imports" }, { "package": "vroom", "role": "Imports" }, { "package": "xml2", "role": "Imports" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "countrycode", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "testthat", "version": ">= 3.0.0", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-39", "n": 11 }, { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.9.0", "bioc": "3.24" }, { "branch": "release", "version": "1.8.0", "bioc": "3.23" } ], "_topics": [ "software", "dataimport", "biomedicalinformatics", "pharmacogenomics", "adverse-events", "drug-safety", "faers", "faers-procedure", "pharmacovigilance", "signal-detection" ], "_stars": 47, "_contributors": [ { "user": "maddert", "count": 32, "uuid": 148871164 }, { "user": "shixiangwang", "count": 10, "uuid": 25057508 }, { "user": "jwokaty", "count": 6, "uuid": 1744257 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 346, "source": "https://www.bioconductor.org/packages/stats/bioc/faers" }, "_devurl": "https://github.com/wanglabcsu/faers", "_searchresults": 11, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/faers.html", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "manual.pdf" ], "_homeurl": "https://github.com/wanglabcsu/faers", "_realowner": "bioc", "_cranurl": false, "_exports": [ "athena", "faers", "faers_available", "faers_before_period", "faers_clearcache", "faers_combine", "faers_counts", "faers_data", "faers_dedup", "faers_deleted_cases", "faers_download", "faers_filter", "faers_get", "faers_header", "faers_keep", "faers_load", "faers_meddra", "faers_merge", "faers_meta", "faers_mget", "faers_modify", "faers_parse", "faers_period", "faers_phv_signal", "faers_phv_table", "faers_primaryid", "faers_quarter", "faers_standardize", "faers_year", "fda_drugs", "meddra", "meddra_hierarchy", "meddra_smq", "meddra_version", "phv_bcpnn_mcmc", "phv_bcpnn_norm", "phv_chisq", "phv_ebgm", "phv_fisher", "phv_obsexp_shrink", "phv_prr", "phv_ror", "phv_signal", "show" ], "_help": [ { "page": "athena", "title": "Read and Parse ATHENA VOCABULARIES data", "topics": [ "athena" ] }, { "page": "faers", "title": "Download and parse FAERS Quarterly Data files", "topics": [ "faers" ] }, { "page": "faers_available", "title": "Check if FAERS year", "topics": [ "faers_available" ] }, { "page": "faers_before_period", "title": "Test whether years and quarters are before specified period", "topics": [ "faers_before_period" ] }, { "page": "faers_clearcache", "title": "Remove caches", "topics": [ "faers_clearcache" ] }, { "page": "faers_combine", "title": "Combine FAERS objects from different Quarterly files.", "topics": [ "faers_combine" ] }, { "page": "faers_counts", "title": "Counting the number of unique case for each event", "topics": [ "faers_counts", "faers_counts,FAERSascii-method" ] }, { "page": "faers_dedup", "title": "Tidy up FAERS Quarterly Data with duplicate records removed", "topics": [ "faers_dedup", "faers_dedup,ANY-method", "faers_dedup,FAERSascii-method", "faers_dedup,FAERSxml-method" ] }, { "page": "faers_download", "title": "Download FAERS data", "topics": [ "faers_download" ] }, { "page": "FAERS-methods", "title": "Methods for FAERS class", "topics": [ "$,FAERSascii-method", "faers_filter", "faers_filter,FAERSascii-method", "faers_get", "faers_get,FAERSascii-method", "faers_keep", "faers_keep,FAERSascii-method", "faers_mget", "faers_mget,FAERSascii-method", "faers_modify", "faers_modify,FAERSascii-method", "faers_primaryid", "faers_primaryid,FAERSascii-method", "[,FAERSascii,ANY,ANY,ANY-method", "[,FAERSascii-method", "[[,FAERSascii-method" ] }, { "page": "faers_load", "title": "Load data attached in faers package", "topics": [ "faers_load" ] }, { "page": "faers_merge", "title": "Merge all FAERS field data into one", "topics": [ "faers_merge", "faers_merge,ANY-method", "faers_merge,FAERSascii-method", "faers_merge,FAERSxml-method" ] }, { "page": "faers_meta", "title": "List of FAERS data", "topics": [ "faers_meta" ] }, { "page": "faers_parse", "title": "Parse FAERS Quarterly Data", "topics": [ "faers_parse" ] }, { "page": "faers_phv_signal", "title": "Create contingency table and run disproportionality analysis", "topics": [ "faers_phv_signal", "faers_phv_signal,FAERSascii-method", "faers_phv_table", "faers_phv_table,FAERSascii,FAERSascii,missing-method", "faers_phv_table,FAERSascii,missing,FAERSascii-method" ] }, { "page": "faers_standardize", "title": "Standardize FAERS Quarterly Data for Preferred Term and drug names", "topics": [ "faers_standardize", "faers_standardize,FAERSascii-method" ] }, { "page": "FAERS-class", "title": "FAERS class", "topics": [ "FAERS", "FAERS-class", "FAERSascii", "FAERSascii-class", "FAERSxml", "FAERSxml-class", "faers_data", "faers_data,FAERS-method", "faers_deleted_cases", "faers_deleted_cases,FAERSascii-method", "faers_field", "faers_header", "faers_header,FAERSxml-method", "faers_meddra", "faers_meddra,FAERS-method", "faers_period", "faers_period,FAERS-method", "faers_quarter", "faers_quarter,FAERS-method", "faers_year", "faers_year,FAERS-method", "show,FAERS-method", "show,FAERSascii-method" ] }, { "page": "fda_drugs", "title": "Read and Parse Drugs@FDA data", "topics": [ "fda_drugs" ] }, { "page": "MedDRA-class", "title": "MedDRA class", "topics": [ "MedDRA", "meddra", "MedDRA-class", "meddra_hierarchy", "meddra_hierarchy,MedDRA-method", "meddra_smq", "meddra_smq,MedDRA-method", "meddra_version", "meddra_version,MedDRA-method", "show,MedDRA-method" ] }, { "page": "phv_signal", "title": "Pharmacovigilance Analysis", "topics": [ "phv_bcpnn_mcmc", "phv_bcpnn_norm", "phv_chisq", "phv_ebgm", "phv_fisher", "phv_obsexp_shrink", "phv_prr", "phv_ror", "phv_signal" ] } ], "_readme": "https://github.com/bioc/faers/raw/HEAD/README.md", "_rundeps": [ "askpass", "BH", "BiocParallel", "bit", "bit64", "brio", "cli", "coda", "codetools", "cpp11", "crayon", "curl", "data.table", "farver", "formatR", "futile.logger", "futile.options", "ggplot2", "glue", "gtable", "hms", "httr", "httr2", "isoband", "jsonlite", "labeling", "lambda.r", "lattice", "lifecycle", "magrittr", "MASS", "Matrix", "MatrixModels", "mcmc", "MCMCpack", "mime", "openEBGM", "openssl", "pillar", "pkgconfig", "prettyunits", "progress", "quantreg", "R6", "rappdirs", "RColorBrewer", "rlang", "rvest", "S7", "scales", "selectr", "snow", "SparseM", "stringi", "stringr", "survival", "sys", "tibble", "tidyselect", "tzdb", "utf8", "vctrs", "viridisLite", "vroom", "withr", "xml2" ], "_vignettes": [ { "source": "FAERS-Pharmacovigilance.Rmd", "filename": "FAERS-Pharmacovigilance.html", "title": "FAERS-Pharmacovigilance", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Installation", "Pharmacovigilance Analysis using FAERS", "Check metadata of FAERS", "Download and Parse quarterly data files from FAERS", "Standardize and De-duplication", "Pharmacovigilance analysis", "sessionInfo" ], "created": "2023-11-01 07:48:48", "modified": "2025-09-23 09:10:13", "commits": 18 } ], "_score": 6.190611797813605, "_indexed": true, "_nocasepkg": "faers", "_universes": [ "bioc", "wanglabcsu" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.9.0", "date": "2026-05-30T08:33:26.000Z", "distro": "noble", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "45df324bfe78f5a74ed24af46fd3f06a9ec0f7a691ddf839aea73ee155b99dc1", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.6.0", "os": "linux", "version": "1.9.0", "date": "2026-05-30T08:34:04.000Z", "distro": "noble", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "04fbbcd4d573687a6fc5c0f12b0fa54efe054ac21c2c1db01e329a39032ffccb", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.5.3", "os": "mac", "version": "1.9.0", "date": "2026-05-30T12:00:10.000Z", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "2b11e66c7ad1ae87f5c5bbf749845a84188037d49073cf5bcf76323be488e91f", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.6.0", "os": "mac", "version": "1.9.0", "date": "2026-05-30T12:00:32.000Z", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "3ad0f7bb048327a03587220b483f99f52bfba486295674eec6de91bf9bbff647", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.6.0", "os": "wasm", "version": "1.9.0", "date": "2026-05-30T08:32:31.000Z", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "8133bd19eccf4e0d9e8dc6e24e5975d619462490babc4f37dad1e94cfb0e30e1", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.7.0", "os": "win", "version": "1.9.0", "date": "2026-05-30T08:31:40.000Z", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "2a0dfaee44ffc4516a5552a17800c87071ed7e6f59608bcd2508bfe87f7837ce", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.5.3", "os": "win", "version": "1.9.0", "date": "2026-05-30T08:31:37.000Z", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "935414d099e16bebf8dad7d35c711da330b9602d2b64dbc0d6718d718f5ac22c", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" }, { "r": "4.6.0", "os": "win", "version": "1.9.0", "date": "2026-05-30T08:31:35.000Z", "commit": "eaba84e1cb5771f78c6ad51cbd23566da0771d09", "fileid": "2a0430ef654a0fb39fe5d5171f2fb187e114154b5dceed9111f657ddffc98647", "status": "success", "check": "OK", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26679197433" } ] }