Package: dorothea 1.25.0

Pau Badia-i-Mompel

dorothea: Collection Of Human And Mouse TF Regulons

DoRothEA is a gene regulatory network containing signed transcription factor (TF) - target gene interactions. DoRothEA regulons, the collection of a TF and its transcriptional targets, were curated and collected from different types of evidence for both human and mouse. A confidence level was assigned to each TF-target interaction based on the number of supporting evidence.

Authors:Pau Badia-i-Mompel [cre], Daniel Dimitrov [aut], Christian H. Holland [aut], Luz Garcia-Alonso [aut], Alberto Valdeolivas [ctb], Minoo Ashtiani [ctb], Attila Gabor [ctb]

dorothea_1.25.0.tar.gz
dorothea_1.25.0.tar.gz(r-4.7-any)dorothea_1.25.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
dorothea/json (API)

# Install 'dorothea' in R:
install.packages('dorothea', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/saezlab/dorothea/issues

Pkgdown/docs site:https://saezlab.github.io

Datasets:

On BioConductor:dorothea-1.25.0(data/experiment 3.24)dorothea-1.23.0(data/experiment 3.23)

experimentdatahomo_sapiens_datamus_musculus_databioconductor-packagefunctional-analysisgene-expressionregulonstf-activitiestranscription-factordatapkg

7.82 score 163 stars 454 scripts 3 exports 37 dependencies

Last updated from:4feba311dc. Checks:4 ERROR. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR205
linux-develERROR299
source / vignettesERROR417
linux-releaseERROR321

Exports:%>%df2regulonrun_viper

Dependencies:backportsbcellViperBHBiobaseBiocGenericsBiocParallelbroomclicodetoolscpp11decoupleRdplyrformatRfutile.loggerfutile.optionsgenericsgluelambda.rlatticelifecyclemagrittrMatrixparallellypillarpkgconfigpurrrR6rlangsnowstringistringrtibbletidyrtidyselectutf8vctrswithr