Package: crisprBwa 1.9.0
crisprBwa: BWA-based alignment of CRISPR gRNA spacer sequences
Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Currently not supported on Windows machines.
Authors:
crisprBwa_1.9.0.tar.gz
crisprBwa_1.9.0.tgz(r-4.4-any)crisprBwa_1.9.0.tgz(r-4.3-any)
crisprBwa_1.9.0.tar.gz(r-4.5-noble)crisprBwa_1.9.0.tar.gz(r-4.4-noble)
crisprBwa_1.9.0.tgz(r-4.4-emscripten)crisprBwa_1.9.0.tgz(r-4.3-emscripten)
crisprBwa.pdf |crisprBwa.html✨
crisprBwa/json (API)
NEWS
# Install 'crisprBwa' in R: |
install.packages('crisprBwa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/crisprverse/crisprbwa/issues
On BioConductor:crisprBwa-1.9.0(bioc 3.20)crisprBwa-1.8.0(bioc 3.19)
Last updated 2 months agofrom:d4684ac7c1
Exports:runBwarunCrisprBwa
Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomeclicliprcodetoolscpp11crayoncrisprBasecurlDelayedArrayfansiformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehmshttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigprettyunitsprogressR6RbwaRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXMLXVectoryamlzlibbioc
Readme and manuals
Help Manual
Help page | Topics |
---|---|
Run BWA short-read aligner | runBwa |
Find gRNA spacer alignments with bwa | runCrisprBwa |