Package: crisprBwa 1.11.0

Jean-Philippe Fortin

crisprBwa: BWA-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Currently not supported on Windows machines.

Authors:Jean-Philippe Fortin [aut, cre]

crisprBwa_1.11.0.tar.gz

crisprBwa_1.11.0.tgz(r-4.4-any)crisprBwa_1.11.0.tgz(r-4.3-any)
crisprBwa_1.11.0.tar.gz(r-4.5-noble)crisprBwa_1.11.0.tar.gz(r-4.4-noble)
crisprBwa_1.11.0.tgz(r-4.4-emscripten)crisprBwa_1.11.0.tgz(r-4.3-emscripten)
crisprBwa.pdf |crisprBwa.html✨
crisprBwa/json (API)
NEWS

# Install 'crisprBwa' in R:
install.packages('crisprBwa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/crisprverse/crisprbwa/issues

On BioConductor:crisprBwa-1.11.0(bioc 3.21)crisprBwa-1.10.0(bioc 3.20)

crisprfunctionalgenomicsalignmentalignerbioconductorbioconductor-packagebwacrispr-analysiscrispr-cas9crispr-designcrispr-targetgrnagrna-sequencegrna-sequencessgrnasgrna-design

4.30 score 1 stars 6 scripts 162 downloads 2 exports 77 dependencies

Last updated 23 days agofrom:3b1e984835. Checks:OK: 1 NOTE: 3. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 19 2024
R-4.5-linuxNOTENov 19 2024
R-4.4-macNOTENov 19 2024
R-4.3-macNOTENov 19 2024

Exports:runBwarunCrisprBwa

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomeclicliprcodetoolscpp11crayoncrisprBasecurlDelayedArrayfansiformatRfutile.loggerfutile.optionsgenericsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehmshttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigprettyunitsprogressR6RbwaRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXMLXVectoryamlzlibbioc

crisprBwa: alignment of gRNA spacer sequences using BWA

Jean-Philippe Fortin

Rendered fromcrisprBwa.Rmdusingknitr::rmarkdownon Nov 19 2024.

Last update: 2022-10-17
Started: 2022-01-21