# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
 
cff-version: 1.2.0
message: 'To cite package "crisprBwa" in publications use:'
type: software
license: MIT
title: 'crisprBwa: BWA-based alignment of CRISPR gRNA spacer sequences'
version: 1.9.0
abstract: Provides a user-friendly interface to map on-targets and off-targets of
  CRISPR gRNA spacer sequences using bwa. The alignment is fast, and can be performed
  using either commonly-used or custom CRISPR nucleases. The alignment can work with
  any reference or custom genomes. Currently not supported on Windows machines.
authors:
- family-names: Fortin
  given-names: Jean-Philippe
  email: fortin946@gmail.com
preferred-citation:
  type: article
  title: A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs
    across nucleases and technologies
  authors:
  - family-names: Hoberecht
    given-names: Luke
  - family-names: Perampalam
    given-names: Pirunthan
  - family-names: Lun
    given-names: Aaron
  - family-names: Fortin
    given-names: Jean-Philippe
    email: fortin946@gmail.com
  journal: Nature Communications
  volume: '13'
  issue: '1'
  year: '2022'
  start: '6568'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/crisprVerse/crisprBwa
url: https://github.com/crisprVerse/crisprBwa
date-released: '2022-10-17'
contact:
- family-names: Fortin
  given-names: Jean-Philippe
  email: fortin946@gmail.com
references:
- type: article
  title: Fast and accurate short read alignment with Burrows--Wheeler transform
  authors:
  - name: Li
  - name: Heng
  - name: Durbin
  - name: Richard
  journal: Bioinformatics
  volume: '25'
  issue: '14'
  year: '2009'
  start: '1754'
  end: '1760'