Package: crisprBowtie 1.9.0

Jean-Philippe Fortin

crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Authors:Jean-Philippe Fortin [aut, cre]

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crisprBowtie.pdf |crisprBowtie.html✨
crisprBowtie/json (API)
NEWS

Peer review:

Bug tracker:https://github.com/crisprverse/crisprbowtie/issues

On BioConductor:crisprBowtie-1.9.0(bioc 3.20)crisprBowtie-1.8.0(bioc 3.19)

bioconductor-package

2 exports 1.51 score 76 dependencies 4 dependents

Last updated 2 months agofrom:c78e8a1b5e

Exports:runBowtierunCrisprBowtie

Dependencies:abindaskpassBHBiobaseBiocGenericsBiocIOBiocParallelBiostringsbitbit64bitopsBSgenomeclicliprcodetoolscpp11crayoncrisprBasecurlDelayedArrayfansiformatRfutile.loggerfutile.optionsGenomeInfoDbGenomeInfoDbDataGenomicAlignmentsGenomicRangesgluehmshttrIRangesjsonlitelambda.rlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmimeopensslpillarpkgconfigprettyunitsprogressR6RbowtieRCurlreadrrestfulrRhtslibrjsonrlangRsamtoolsrtracklayerS4ArraysS4VectorssnowSparseArraystringistringrSummarizedExperimentsystibbletidyselecttzdbUCSC.utilsutf8vctrsvroomwithrXMLXVectoryamlzlibbioc