Package: crisprBowtie 1.11.0

Jean-Philippe Fortin

crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Authors:Jean-Philippe Fortin [aut, cre]

crisprBowtie_1.11.0.tar.gz
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crisprBowtie.pdf |crisprBowtie.html✨
crisprBowtie/json (API)
NEWS

# Install 'crisprBowtie' in R:

install.packages('crisprBowtie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprbowtie/issues

On BioConductor:crisprBowtie-1.11.0(bioc 3.21)crisprBowtie-1.10.0(bioc 3.20)

crispr functionalgenomics alignment aligner bioconductor bioconductor-package bowtie crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design

5.86 score 3 stars 4 packages 7 scripts 297 downloads 2 exports 77 dependencies

Last updated 2 months agofrom:fa0a52f5b5. Checks:OK: 3 NOTE: 4. Indexed: yes.

Target	Result	Date
Doc / Vignettes	OK	Nov 29 2024
R-4.5-win	NOTE	Nov 29 2024
R-4.5-linux	NOTE	Nov 29 2024
R-4.4-win	NOTE	Nov 29 2024
R-4.4-mac	NOTE	Nov 29 2024
R-4.3-win	OK	Nov 29 2024
R-4.3-mac	OK	Nov 29 2024