Package: crisprBowtie 1.17.0

Jean-Philippe Fortin

crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Authors:Jean-Philippe Fortin [aut, cre]

crisprBowtie_1.17.0.tar.gz
crisprBowtie_1.17.0.zip(r-4.7-any)crisprBowtie_1.17.0.zip(r-4.6-any)crisprBowtie_1.17.0.zip(r-4.5-any)
crisprBowtie_1.17.0.tgz(r-4.6-any)crisprBowtie_1.17.0.tgz(r-4.5-any)
crisprBowtie_1.17.0.tar.gz(r-4.7-any)crisprBowtie_1.17.0.tar.gz(r-4.6-any)
crisprBowtie_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
crisprBowtie/json (API)

# Install 'crisprBowtie' in R:

install.packages('crisprBowtie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprbowtie/issues

On BioConductor:crisprBowtie-1.17.0(bioc 3.24)crisprBowtie-1.16.0(bioc 3.23)

crispr functionalgenomics alignment aligner bioconductor bioconductor-package bowtie crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design

5.86 score 3 stars 4 packages 10 scripts 490 downloads 2 exports 66 dependencies

Last updated from:37de0a3c6e. Checks:8 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	NOTE	188
linux-devel	NOTE	389
source / vignettes	OK	332
linux-release	NOTE	357
macos-release	NOTE	303
macos-oldrel	NOTE	239
windows-devel	NOTE	278
windows-release	NOTE	254
windows-oldrel	NOTE	278
wasm-release	OK	166