Package: crisprBowtie 1.11.0

Jean-Philippe Fortin

crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences

Provides a user-friendly interface to map on-targets and off-targets of CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed using either commonly-used or custom CRISPR nucleases. The alignment can work with any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.

Authors:Jean-Philippe Fortin [aut, cre]

crisprBowtie_1.11.0.tar.gz
crisprBowtie_1.11.0.zip(r-4.5)crisprBowtie_1.11.0.zip(r-4.4)crisprBowtie_1.11.0.zip(r-4.3)
crisprBowtie_1.11.0.tgz(r-4.5-any)crisprBowtie_1.11.0.tgz(r-4.4-any)crisprBowtie_1.11.0.tgz(r-4.3-any)
crisprBowtie_1.11.0.tar.gz(r-4.5-noble)crisprBowtie_1.11.0.tar.gz(r-4.4-noble)
crisprBowtie_1.11.0.tgz(r-4.4-emscripten)crisprBowtie_1.11.0.tgz(r-4.3-emscripten)
crisprBowtie.pdf |crisprBowtie.html✨
crisprBowtie/json (API)
NEWS

# Install 'crisprBowtie' in R:

install.packages('crisprBowtie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/crisprverse/crisprbowtie/issues

On BioConductor:crisprBowtie-1.11.0(bioc 3.21)crisprBowtie-1.10.0(bioc 3.20)

crispr functionalgenomics alignment aligner bioconductor bioconductor-package bowtie crispr-analysis crispr-cas9 crispr-design crispr-target grna grna-sequence grna-sequences sgrna sgrna-design

5.86 score 3 stars 4 packages 7 scripts 340 downloads 2 exports 76 dependencies

Last updated 4 months agofrom:fa0a52f5b5. Checks:3 OK, 5 NOTE. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 28 2025
R-4.5-win	NOTE	Jan 28 2025
R-4.5-mac	NOTE	Jan 28 2025
R-4.5-linux	NOTE	Jan 28 2025
R-4.4-win	NOTE	Jan 28 2025
R-4.4-mac	NOTE	Jan 28 2025
R-4.3-win	OK	Jan 28 2025
R-4.3-mac	OK	Jan 28 2025