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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "crisprBowtie" in publications use:'
type: software
license: MIT
title: 'crisprBowtie: Bowtie-based alignment of CRISPR gRNA spacer sequences'
version: 1.9.0
abstract: Provides a user-friendly interface to map on-targets and off-targets of
  CRISPR gRNA spacer sequences using bowtie. The alignment is fast, and can be performed
  using either commonly-used or custom CRISPR nucleases. The alignment can work with
  any reference or custom genomes. Both DNA- and RNA-targeting nucleases are supported.
authors:
- family-names: Fortin
  given-names: Jean-Philippe
  email: fortin946@gmail.com
preferred-citation:
  type: article
  title: A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs
    across nucleases and technologies
  authors:
  - family-names: Hoberecht
    given-names: Luke
  - family-names: Perampalam
    given-names: Pirunthan
  - family-names: Lun
    given-names: Aaron
  - family-names: Fortin
    given-names: Jean-Philippe
    email: fortin946@gmail.com
  journal: Nature Communications
  volume: '13'
  issue: '1'
  year: '2022'
  start: '6568'
repository: https://bioc.r-universe.dev
repository-code: https://github.com/crisprVerse/crisprBowtie
url: https://github.com/crisprVerse/crisprBowtie
date-released: '2023-02-17'
contact:
- family-names: Fortin
  given-names: Jean-Philippe
  email: fortin946@gmail.com
references:
- type: article
  title: Ultrafast and memory-efficient alignment of short DNA sequences to the human
    genome
  authors:
  - name: Langmead
  - name: Ben
  - name: Trapnell
  - name: Cole
  - name: Pop
  - name: Mihai
  - name: Salzberg
  - family-names: L
    given-names: Steven
  journal: Genome biology
  volume: '10'
  issue: '3'
  year: '2009'
  start: '1'
  end: '10'