To cite package ‘crisprBowtie’ in publications use:

  Hoberecht L, Perampalam P, Lun A, Fortin JP. A comprehensive
  Bioconductor ecosystem for the design of CRISPR guide RNAs across
  nucleases and technologies. Nature Communications. 2022 Nov
  2;13(1):6568.

A BibTeX entry for LaTeX users is

  @Article{,
    author = {Luke Hoberecht and Pirunthan Perampalam and Aaron Lun and Jean-Philippe Fortin},
    title = {A comprehensive Bioconductor ecosystem for the design of CRISPR guide RNAs across nucleases and technologies},
    journal = {Nature Communications},
    volume = {13},
    number = {1},
    pages = {6568},
    year = {2022},
  }

  Langmead B, Trapnell C, Pop M, Salzberg SL. Ultrafast and
  memory-efficient alignment of short DNA sequences to the human
  genome. Genome biology. 2009 Mar;10(3):1-0.

A BibTeX entry for LaTeX users is

  @Article{,
    title = {Ultrafast and memory-efficient alignment of short DNA sequences to the human genome},
    author = {{Langmead} and {Ben} and {Trapnell} and {Cole} and {Pop} and {Mihai} and {Salzberg} and Steven L},
    journal = {Genome biology},
    volume = {10},
    number = {3},
    pages = {1--10},
    year = {2009},
  }