Package: concordexR 1.5.0

Kayla Jackson

concordexR: Calculate the concordex coefficient

Many analysis workflows include approximation of a nearest neighbors graph followed by clustering of the graph structure. The concordex coefficient estimates the concordance between the graph and clustering results. The package 'concordexR' is an R implementation of the original concordex Python-based command line tool.

Authors:Kayla Jackson [aut, cre], A. Sina Booeshaghi [aut], Angel Galvez-Merchan [aut], Lambda Moses [aut], Laura Luebbert [ctb], Lior Pachter [aut, rev, ths]

concordexR_1.5.0.tar.gz
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concordexR.pdf |concordexR.html✨
concordexR/json (API)
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Bug tracker:https://github.com/pachterlab/concordexr/issues

On BioConductor:concordexR-1.5.0(bioc 3.20)concordexR-1.4.0(bioc 3.19)

bioconductor-package

3 exports 0.49 score 50 dependencies

Last updated 2 months agofrom:281397f5e7

Exports:calculateConcordexheatConcordexplotConcordexSim

Dependencies:abindBHBiocGenericsBiocParallelclicodetoolscolorspacecpp11crayonDelayedArrayfansifarverformatRfutile.loggerfutile.optionsggplot2gluegtableIRangesisobandlabelinglambda.rlatticelifecyclemagrittrMASSMatrixMatrixGenericsmatrixStatsmgcvmunsellnlmepheatmappillarpkgconfigR6RColorBrewerrlangS4ArraysS4VectorsscalessnowSparseArraytibbleutf8vctrsviridisLitewithrXVectorzlibbioc