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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "concordexR" in publications use:'
type: software
license: Artistic-2.0
title: 'concordexR: Identify Spatial Homogeneous Regions with concordex'
version: 1.5.5
abstract: Spatial homogeneous regions (SHRs) in tissues are domains that are homogenous
  with respect to cell type composition. We present a method for identifying SHRs
  using spatial transcriptomics data, and demonstrate that it is efficient and effective
  at finding SHRs for a wide variety of tissue types. concordex relies on analysis
  of k-nearest-neighbor (kNN) graphs. The tool is also useful for analysis of non-spatial
  transcriptomics data, and can elucidate the extent of concordance between partitions
  of cells derived from clustering algorithms, and transcriptomic similarity as represented
  in kNN graphs.
authors:
- family-names: Jackson
  given-names: Kayla
  email: kaylajac@caltech.edu
  orcid: https://orcid.org/0000-0001-6483-0108
- family-names: Booeshaghi
  given-names: A. Sina
  email: alisina@caltech.edu
  orcid: https://orcid.org/0000-0002-6442-4502
- family-names: Galvez-Merchan
  given-names: Angel
  email: agalvezm@caltech.edu
  orcid: https://orcid.org/0000-0001-7420-8697
- family-names: Moses
  given-names: Lambda
  email: dlu2@caltech.edu
  orcid: https://orcid.org/0000-0002-7092-9427
- family-names: Pachter
  given-names: Lior
  email: lpachter@caltech.edu
  orcid: https://orcid.org/0000-0002-9164-6231
repository: https://bioc.r-universe.dev
repository-code: https://github.com/pachterlab/concordexR
url: https://pachterlab.github.io/concordexR/
contact:
- family-names: Jackson
  given-names: Kayla
  email: kaylajac@caltech.edu
  orcid: https://orcid.org/0000-0001-6483-0108