{ "_id": "6a494bd7f6c47c44194992be", "Package": "concordexR", "Title": "Identify Spatial Homogeneous Regions with concordex", "Version": "1.13.0", "Authors@R": "c(\nperson(\"Kayla\", \"Jackson\", , \"kaylajac@caltech.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-6483-0108\")),\nperson(\"A. Sina\", \"Booeshaghi\", , \"alisina@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-6442-4502\")),\nperson(\"Angel\", \"Galvez-Merchan\", , \"agalvezm@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-7420-8697\")),\nperson(\"Lambda\", \"Moses\", , \"dlu2@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-7092-9427\")),\nperson(\"Alexandra\", \"Kim\", , \"alexandrasuriya@gmail.com\", role = \"ctb\"),\nperson(\"Laura\", \"Luebbert\", , \"lauraluebbert@caltech.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-1379-2927\")),\nperson(\"Lior\", \"Pachter\", , \"lpachter@caltech.edu\", role = c(\"aut\", \"rev\", \"ths\"),\ncomment = c(ORCID = \"0000-0002-9164-6231\"))\n)", "Description": "Spatial homogeneous regions (SHRs) in tissues are domains\nthat are homogenous with respect to cell type composition. We\npresent a method for identifying SHRs using spatial\ntranscriptomics data, and demonstrate that it is efficient and\neffective at finding SHRs for a wide variety of tissue types.\nconcordex relies on analysis of k-nearest-neighbor (kNN)\ngraphs. The tool is also useful for analysis of non-spatial\ntranscriptomics data, and can elucidate the extent of\nconcordance between partitions of cells derived from clustering\nalgorithms, and transcriptomic similarity as represented in kNN\ngraphs.", "License": "Artistic-2.0", "URL": "https://github.com/pachterlab/concordexR,\nhttps://pachterlab.github.io/concordexR/", "BugReports": "https://github.com/pachterlab/concordexR/issues", "VignetteBuilder": "knitr", "biocViews": "SingleCell, Clustering, Spatial, Transcriptomics", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libglpk-dev libmagick++-dev gsfonts libicu-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:00:35 UTC", "RemoteUrl": "https://github.com/bioc/concordexR", "RemoteRef": "HEAD", "RemoteSha": "3b93bdfd7a224aee10649d0e880910ba84fd332e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-07-03 18:46:08 UTC", "User": "root" }, "Author": "Kayla Jackson [aut, cre] (ORCID:\n),\nA. Sina Booeshaghi [aut] (ORCID:\n),\nAngel Galvez-Merchan [aut] (ORCID:\n),\nLambda Moses [aut] (ORCID: ),\nAlexandra Kim [ctb],\nLaura Luebbert [ctb] (ORCID: ),\nLior Pachter [aut, rev, ths] (ORCID:\n)", "Maintainer": "Kayla Jackson ", "_user": "bioc", "_type": "src", "_file": "concordexR_1.13.0.tar.gz", "_fileid": "https://r2.ropensci.org/fa866bb78e24ae7f163df0b954a075f1dfc6ae8cb8cec7efc78c20f9bba47de4", "_filesize": 1070595, "_sha256": "fa866bb78e24ae7f163df0b954a075f1dfc6ae8cb8cec7efc78c20f9bba47de4", "_expires": "2026-10-12T18:07:17.000Z", "_created": "2026-07-03T18:46:08.000Z", "_published": "2026-07-04T18:07:19.024Z", "_bioccheck": { "error": 0, "warning": 0, "note": 5 }, "_host": "GitHub-Actions", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28677970843", "_status": "success", "_upstream": "https://github.com/bioc/concordexR", "_commit": { "id": "3b93bdfd7a224aee10649d0e880910ba84fd332e", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381235 }, "_maintainer": { "name": "Kayla Jackson", "email": "kaylajac@caltech.edu", "login": "kayla-jackson", "description": "Currently a candidate in the Keck School of Medicine of USC and Caltech MD/PhD program", "uuid": 36088762, "orcid": "0000-0001-6483-0108" }, "_distro": "resolute", "_jobs": [ { "job": 85154886341, "time": 257, "config": "bioc-checks", "r": "4.6.1", "check": "NOTE", "artifact": "8073180472" }, { "job": 85154886237, "time": 438, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "8073218586" }, { "job": 85154886452, "time": 424, "config": "linux-release-x86_64", "r": "4.6.1", "check": "WARNING", "artifact": "8073215539" }, { "job": 85154886398, "time": 182, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "WARNING", "artifact": "8073165129" }, { "job": 85154886448, "time": 242, "config": "macos-release-arm64", "r": "4.6.1", "check": "WARNING", "artifact": 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