{ "_id": "6a1ad76d1d7bb097a09e6427", "Package": "concordexR", "Title": "Identify Spatial Homogeneous Regions with concordex", "Version": "1.13.0", "Authors@R": "c(\nperson(\"Kayla\", \"Jackson\", , \"kaylajac@caltech.edu\", role = c(\"aut\", \"cre\"),\ncomment = c(ORCID = \"0000-0001-6483-0108\")),\nperson(\"A. Sina\", \"Booeshaghi\", , \"alisina@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-6442-4502\")),\nperson(\"Angel\", \"Galvez-Merchan\", , \"agalvezm@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0001-7420-8697\")),\nperson(\"Lambda\", \"Moses\", , \"dlu2@caltech.edu\", role = \"aut\",\ncomment = c(ORCID = \"0000-0002-7092-9427\")),\nperson(\"Alexandra\", \"Kim\", , \"alexandrasuriya@gmail.com\", role = \"ctb\"),\nperson(\"Laura\", \"Luebbert\", , \"lauraluebbert@caltech.edu\", role = \"ctb\",\ncomment = c(ORCID = \"0000-0003-1379-2927\")),\nperson(\"Lior\", \"Pachter\", , \"lpachter@caltech.edu\", role = c(\"aut\", \"rev\", \"ths\"),\ncomment = c(ORCID = \"0000-0002-9164-6231\"))\n)", "Description": "Spatial homogeneous regions (SHRs) in tissues are domains\nthat are homogenous with respect to cell type composition. We\npresent a method for identifying SHRs using spatial\ntranscriptomics data, and demonstrate that it is efficient and\neffective at finding SHRs for a wide variety of tissue types.\nconcordex relies on analysis of k-nearest-neighbor (kNN)\ngraphs. The tool is also useful for analysis of non-spatial\ntranscriptomics data, and can elucidate the extent of\nconcordance between partitions of cells derived from clustering\nalgorithms, and transcriptomic similarity as represented in kNN\ngraphs.", "License": "Artistic-2.0", "URL": "https://github.com/pachterlab/concordexR,\nhttps://pachterlab.github.io/concordexR/", "BugReports": "https://github.com/pachterlab/concordexR/issues", "VignetteBuilder": "knitr", "biocViews": "SingleCell, Clustering, Spatial, Transcriptomics", "Config/testthat/edition": "3", "Encoding": "UTF-8", "Roxygen": "list(markdown = TRUE)", "RoxygenNote": "7.3.2", "Config/pak/sysreqs": "libglpk-dev libmagick++-dev gsfonts libicu-dev\nlibxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:00:35 UTC", "RemoteUrl": "https://github.com/bioc/concordexR", "RemoteRef": "HEAD", "RemoteSha": "3b93bdfd7a224aee10649d0e880910ba84fd332e", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 08:51:02 UTC", "User": "root" }, "Author": "Kayla Jackson [aut, cre] (ORCID:\n),\nA. Sina Booeshaghi [aut] (ORCID:\n),\nAngel Galvez-Merchan [aut] (ORCID:\n),\nLambda Moses [aut] (ORCID: ),\nAlexandra Kim [ctb],\nLaura Luebbert [ctb] (ORCID: ),\nLior Pachter [aut, rev, ths] (ORCID:\n)", "Maintainer": "Kayla Jackson ", "MD5sum": "cfbb031051c83063a3765c9caff93b1e", "_user": "bioc", "_type": "src", "_file": "concordexR_1.13.0.tar.gz", "_fileid": "ab5451484a5a5c5ad61dd98af1ce61f80c5dca82efab94f4fa8c51ee73c2e594", "_filesize": 1059323, "_sha256": "ab5451484a5a5c5ad61dd98af1ce61f80c5dca82efab94f4fa8c51ee73c2e594", "_created": "2026-05-30T08:51:02.000Z", "_published": "2026-05-30T12:26:21.843Z", "_jobs": [ { "job": 78637831233, "time": 258, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7306993317" }, { "job": 78637831240, "time": 503, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "WARNING", "artifact": "7307019026" }, { "job": 78637831230, "time": 453, "config": "linux-release-x86_64", "r": "4.6.0", "check": "WARNING", "artifact": "7307014136" 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