Package: chimeraviz 1.39.0

Introduction | Basic features | Plotting | Overview plot | Building the overview plot | Fusion reads plot | Building the Fusion Reads Plot | 1. Aligning reads to the fusion sequence | Load example fusion event | Extracting fusion reads | Extract the fusion junction sequence | Map fusion reads to the fusion junction sequence | Bowtie | Rsubread | A note on alignment performance | Example .bam file for this example | 2. Import the alignment data into our fusion object | 3. Create the plot | Fusion plot | Building the fusion plot | 1. Load fusion data and find a fusion event | 2. Create an ensembldb object | 3. Coverage information from a .bam file | Plotting the example fusion event | Fusion transcripts plot | Fusion transcript plot | Fusion transcript plot with protein domain annotations | Fusion transcript graph plot | Reporting and filtering | Working with Fusion objects | The fusion report | More information / where to get help | Session Information