Package: cellxgenedp 1.11.0
Martin Morgan
cellxgenedp: Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
Authors:
cellxgenedp_1.11.0.tar.gz
cellxgenedp_1.11.0.zip(r-4.5)cellxgenedp_1.11.0.zip(r-4.4)cellxgenedp_1.11.0.zip(r-4.3)
cellxgenedp_1.11.0.tgz(r-4.4-any)cellxgenedp_1.11.0.tgz(r-4.3-any)
cellxgenedp_1.11.0.tar.gz(r-4.5-noble)cellxgenedp_1.11.0.tar.gz(r-4.4-noble)
cellxgenedp_1.11.0.tgz(r-4.4-emscripten)cellxgenedp_1.11.0.tgz(r-4.3-emscripten)
cellxgenedp.pdf |cellxgenedp.html✨
cellxgenedp/json (API)
NEWS
| # Install 'cellxgenedp' in R: |
| install.packages('cellxgenedp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mtmorgan/cellxgenedp/issues
On BioConductor:cellxgenedp-1.9.1(bioc 3.20)cellxgenedp-1.8.0(bioc 3.19)
singlecelldataimportthirdpartyclient
Last updated 23 days agofrom:c17b43e35c. Checks:OK: 7. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 30 2024 |
| R-4.5-win | OK | Oct 30 2024 |
| R-4.5-linux | OK | Oct 30 2024 |
| R-4.4-win | OK | Oct 30 2024 |
| R-4.4-mac | OK | Oct 30 2024 |
| R-4.3-win | OK | Oct 30 2024 |
| R-4.3-mac | OK | Oct 30 2024 |
Exports:authorscollectionscxgdatasetsdatasets_visualizedbfacetsFACETSfacets_filterfilesfiles_downloadlinkspublisher_metadata
Dependencies:askpassbase64encbslibcachemclicommonmarkcpp11crayoncrosstalkcurldigestdplyrDTevaluatefansifastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetshttpuvhttrjquerylibjsonliteknitrlaterlazyevallifecyclemagrittrmemoisemimeopensslpillarpkgconfigpromisesR6rappdirsRcpprjsonconsrlangrmarkdownsassshinysourcetoolssystibbletidyselecttinytexutf8vctrswithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Query cellxgene collections, datasets, and files | authors collections datasets datasets_visualize files files_download links publisher_metadata |
| Shiny application for discovering, viewing, and downloading cellxgene data | cxg |
| Retrieve updated cellxgene database metadata | db |
| Facets available for querying cellxgene data | FACETS facets facets_filter |
