Package: cellxgenedp 1.17.0
Martin Morgan
cellxgenedp: Discover and Access Single Cell Data Sets in the CELLxGENE Data Portal
The cellxgene data portal (https://cellxgene.cziscience.com/) provides a graphical user interface to collections of single-cell sequence data processed in standard ways to 'count matrix' summaries. The cellxgenedp package provides an alternative, R-based inteface, allowind data discovery, viewing, and downloading.
Authors:
cellxgenedp_1.17.0.tar.gz
cellxgenedp_1.17.0.zip(r-4.7)cellxgenedp_1.17.0.zip(r-4.6)cellxgenedp_1.17.0.zip(r-4.5)
cellxgenedp_1.17.0.tgz(r-4.6-any)cellxgenedp_1.17.0.tgz(r-4.5-any)
cellxgenedp_1.17.0.tar.gz(r-4.7-any)cellxgenedp_1.17.0.tar.gz(r-4.6-any)
cellxgenedp_1.17.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
cellxgenedp/json (API)
NEWS
| # Install 'cellxgenedp' in R: |
| install.packages('cellxgenedp', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/mtmorgan/cellxgenedp/issues
Pkgdown/docs site:https://mtmorgan.github.io
On BioConductor:cellxgenedp-1.17.0(bioc 3.24)cellxgenedp-1.16.0(bioc 3.23)
singlecelldataimportthirdpartyclient
Last updated from:e430ea5519. Checks:1 ERROR, 9 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 167 | ||
| linux-devel-x86_64 | OK | 321 | ||
| source / vignettes | OK | 342 | ||
| linux-release-x86_64 | OK | 316 | ||
| macos-release-arm64 | OK | 195 | ||
| macos-oldrel-arm64 | OK | 203 | ||
| windows-devel | OK | 231 | ||
| windows-release | OK | 241 | ||
| windows-oldrel | OK | 311 | ||
| wasm-release | OK | 129 |
Exports:authorscollectionscxgdatasetsdatasets_visualizedbfacetsFACETSfacets_filterfilesfiles_downloadlinkspublisher_metadata
Dependencies:askpassbase64encbslibcachemclicommonmarkcpp11crosstalkcurldigestdplyrDTevaluatefastmapfontawesomefsgenericsgluehighrhtmltoolshtmlwidgetshttpuvhttrjquerylibjsonliteknitrlaterlazyevallifecyclemagrittrmemoisemimeopensslotelpillarpkgconfigpromisesR6rappdirsRcpprjsonconsrlangrmarkdownsassshinysourcetoolssystibbletidyselecttinytexutf8vctrswithrxfunxtableyaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Query cellxgene collections, datasets, and files | authors collections datasets datasets_visualize files files_download links publisher_metadata |
| Shiny application for discovering, viewing, and downloading cellxgene data | cxg |
| Retrieve updated cellxgene database metadata | db |
| Facets available for querying cellxgene data | FACETS facets facets_filter |
