{
  "_id": "6a1965d6acfb0bcc41de701d",
  "Package": "cellxgenedp",
  "Title": "Discover and Access Single Cell Data Sets in the CELLxGENE Data\nPortal",
  "Version": "1.17.0",
  "Authors@R": "c(person(\ngiven = \"Martin\",\nfamily = \"Morgan\",\nrole = c(\"aut\", \"cre\"),\nemail = \"mtmorgan.bioc@gmail.com\",\ncomment = c(ORCID = \"0000-0002-5874-8148\")\n),\nperson(\"Kayla\", \"Interdonato\", role = \"aut\"))",
  "Description": "The cellxgene data portal\n(https://cellxgene.cziscience.com/) provides a graphical user\ninterface to collections of single-cell sequence data processed\nin standard ways to 'count matrix' summaries. The cellxgenedp\npackage provides an alternative, R-based inteface, allowind\ndata discovery, viewing, and downloading.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
  "Collate": "db.R collections.R datasets.R files.R facets.R keys.R\ncellxgene.R utilities.R publisher_metadata.R cxg.R",
  "biocViews": "SingleCell, DataImport, ThirdPartyClient",
  "URL": "https://mtmorgan.github.io/cellxgenedp/,\nhttps://github.com/mtmorgan/cellxgenedp",
  "BugReports": "https://github.com/mtmorgan/cellxgenedp/issues",
  "Roxygen": "list(markdown = TRUE)",
  "RoxygenNote": "7.3.2",
  "VignetteBuilder": "knitr",
  "Config/testthat/edition": "3",
  "Config/pak/sysreqs": "cmake make libuv1-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:53 UTC",
  "RemoteUrl": "https://github.com/bioc/cellxgenedp",
  "RemoteRef": "HEAD",
  "RemoteSha": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-05-29 08:25:32 UTC",
    "User": "root"
  },
  "Author": "Martin Morgan [aut, cre] (ORCID:\n<https://orcid.org/0000-0002-5874-8148>),\nKayla Interdonato [aut]",
  "Maintainer": "Martin Morgan <mtmorgan.bioc@gmail.com>",
  "MD5sum": "74cb8c2f6cec2c7bc6c75d846aa0d1fd",
  "_user": "bioc",
  "_type": "src",
  "_file": "cellxgenedp_1.17.0.tar.gz",
  "_fileid": "6584dd3b075aff2cb2e2d6b7d89ad75dfcd49de2c1f0200ed9b85a4d0ce1c5bc",
  "_filesize": 155080,
  "_sha256": "6584dd3b075aff2cb2e2d6b7d89ad75dfcd49de2c1f0200ed9b85a4d0ce1c5bc",
  "_created": "2026-05-29T08:25:32.000Z",
  "_published": "2026-05-29T10:09:26.539Z",
  "_jobs": [
    {
      "job": 78465174047,
      "time": 167,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7286428198"
    },
    {
      "job": 78465174060,
      "time": 321,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7286472250"
    },
    {
      "job": 78465174065,
      "time": 316,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7286471024"
    },
    {
      "job": 78465174062,
      "time": 203,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7288231459"
    },
    {
      "job": 78465174184,
      "time": 195,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7288236089"
    },
    {
      "job": 78464346780,
      "time": 342,
      "config": "source",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7286377641"
    },
    {
      "job": 78465174057,
      "time": 129,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7286417464"
    },
    {
      "job": 78465174091,
      "time": 231,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "7286446845"
    },
    {
      "job": 78465174064,
      "time": 311,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "OK",
      "artifact": "7286470019"
    },
    {
      "job": 78465174116,
      "time": 241,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7286449162"
    }
  ],
  "_bioccheck": {
    "error": 1,
    "warning": 1,
    "note": 9
  },
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_upstream": "https://github.com/bioc/cellxgenedp",
  "_commit": {
    "id": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381073
  },
  "_maintainer": {
    "name": "Martin Morgan",
    "email": "mtmorgan.bioc@gmail.com",
    "login": "mtmorgan",
    "orcid": "0000-0002-5874-8148",
    "description": "",
    "uuid": 118552
  },
  "_distro": "noble",
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1.0",
      "role": "Depends"
    },
    {
      "package": "dplyr",
      "role": "Depends"
    },
    {
      "package": "httr",
      "role": "Imports"
    },
    {
      "package": "curl",
      "role": "Imports"
    },
    {
      "package": "utils",
      "role": "Imports"
    },
    {
      "package": "tools",
      "role": "Imports"
    },
    {
      "package": "cli",
      "role": "Imports"
    },
    {
      "package": "shiny",
      "role": "Imports"
    },
    {
      "package": "DT",
      "role": "Imports"
    },
    {
      "package": "rjsoncons",
      "role": "Imports"
    },
    {
      "package": "zellkonverter",
      "role": "Suggests"
    },
    {
      "package": "SingleCellExperiment",
      "role": "Suggests"
    },
    {
      "package": "HDF5Array",
      "role": "Suggests"
    },
    {
      "package": "tidyr",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "version": ">= 3.0.0",
      "role": "Suggests"
    },
    {
      "package": "mockery",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-28",
      "n": 1
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.17.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.16.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "singlecell",
    "dataimport",
    "thirdpartyclient"
  ],
  "_stars": 9,
  "_contributors": [
    {
      "user": "mtmorgan",
      "count": 82,
      "uuid": 118552
    },
    {
      "user": "jwokaty",
      "count": 12,
      "uuid": 1744257
    },
    {
      "user": "kayla-morrell",
      "count": 5,
      "uuid": 32339524
    },
    {
      "user": "nturaga",
      "count": 2,
      "uuid": 2746443
    },
    {
      "user": "stemangiola",
      "count": 1,
      "uuid": 7232890
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 401,
    "source": "https://www.bioconductor.org/packages/stats/bioc/cellxgenedp"
  },
  "_devurl": "https://github.com/mtmorgan/cellxgenedp",
  "_pkgdown": "https://mtmorgan.github.io/cellxgenedp/",
  "_searchresults": 46,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/cellxgenedp.html",
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/mtmorgan/cellxgenedp",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "authors",
    "collections",
    "cxg",
    "datasets",
    "datasets_visualize",
    "db",
    "facets",
    "FACETS",
    "facets_filter",
    "files",
    "files_download",
    "links",
    "publisher_metadata"
  ],
  "_help": [
    {
      "page": "query",
      "title": "Query cellxgene collections, datasets, and files",
      "topics": [
        "authors",
        "collections",
        "datasets",
        "datasets_visualize",
        "files",
        "files_download",
        "links",
        "publisher_metadata"
      ]
    },
    {
      "page": "cxg",
      "title": "Shiny application for discovering, viewing, and downloading cellxgene data",
      "topics": [
        "cxg"
      ]
    },
    {
      "page": "db",
      "title": "Retrieve updated cellxgene database metadata",
      "topics": [
        "db"
      ]
    },
    {
      "page": "facets",
      "title": "Facets available for querying cellxgene data",
      "topics": [
        "FACETS",
        "facets",
        "facets_filter"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/cellxgenedp/raw/HEAD/README.md",
  "_rundeps": [
    "askpass",
    "base64enc",
    "bslib",
    "cachem",
    "cli",
    "commonmark",
    "cpp11",
    "crosstalk",
    "curl",
    "digest",
    "dplyr",
    "DT",
    "evaluate",
    "fastmap",
    "fontawesome",
    "fs",
    "generics",
    "glue",
    "highr",
    "htmltools",
    "htmlwidgets",
    "httpuv",
    "httr",
    "jquerylib",
    "jsonlite",
    "knitr",
    "later",
    "lazyeval",
    "lifecycle",
    "magrittr",
    "memoise",
    "mime",
    "openssl",
    "otel",
    "pillar",
    "pkgconfig",
    "promises",
    "R6",
    "rappdirs",
    "Rcpp",
    "rjsoncons",
    "rlang",
    "rmarkdown",
    "sass",
    "shiny",
    "sourcetools",
    "sys",
    "tibble",
    "tidyselect",
    "tinytex",
    "utf8",
    "vctrs",
    "withr",
    "xfun",
    "xtable",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "b_case_studies.Rmd",
      "filename": "b_case_studies.html",
      "title": "Case studies",
      "author": "Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Setup",
        "Case study: authors & datasets",
        "Challenge and solution",
        "Areas of interest",
        "Collaboration",
        "Duplicate collection-author combinations",
        "What is an 'author'?",
        "Case study: using ontology to identify datasets",
        "Session information"
      ],
      "created": "2024-01-17 19:48:11",
      "modified": "2024-01-18 20:02:48",
      "commits": 5
    },
    {
      "source": "a_using_cellxgenedp.Rmd",
      "filename": "a_using_cellxgenedp.html",
      "title": "Discovery and retrieval",
      "author": "Martin Morgan",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Installation and use",
        "cxg() Provides a 'shiny' interface",
        "Collections, datasets and files",
        "Using dplyr to navigate data",
        "facets() provides information on 'levels' present in specific columns",
        "Filtering faceted columns",
        "Publication and other external data",
        "Visualizing data in cellxgene",
        "File download and use",
        "Next steps",
        "API changes",
        "Session info"
      ],
      "created": "2024-01-17 19:48:11",
      "modified": "2024-01-18 20:02:48",
      "commits": 2
    }
  ],
  "_score": 6.696181587168524,
  "_indexed": true,
  "_nocasepkg": "cellxgenedp",
  "_universes": [
    "bioc",
    "mtmorgan"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-05-29T08:28:41.000Z",
      "distro": "noble",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "24d101876ed1a48833d0b1962ece35abaeb0598e678a5538cf03c3b59746c897",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-05-29T08:28:59.000Z",
      "distro": "noble",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "da005d83a66c7d28e3072c46a29c0db52aa855541a463d84f81357830089d7b7",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-05-29T10:06:44.000Z",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "f462cfbacca5d6238342c00d08d3d401d0fc5f687d4599c0f50ba5206543613f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-05-29T10:07:12.000Z",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "96d1833f7e07b98b590b562760a3ba62f84bcb8259247acd38c180c5f0911c61",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.17.0",
      "date": "2026-05-29T08:28:03.000Z",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "ba724f44262bb405642e280b572623aa4665d5d30bd728668b227e9295cc307c",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.17.0",
      "date": "2026-05-29T08:27:29.000Z",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "ce9572a5bcafda9a6c23d1995311a50d3bab7f3c6679547487240c47bf606253",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.17.0",
      "date": "2026-05-29T08:26:57.000Z",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "d0cd2c228097656cde3b77810989313f4c2783321aff968350b1925b840a51fd",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    },
    {
      "r": "4.6.0",
      "os": "win",
      "version": "1.17.0",
      "date": "2026-05-29T08:27:04.000Z",
      "commit": "e430ea5519fe7ef4dc75f569d904bfdb20fd653a",
      "fileid": "10b70ae5d58bff8598e1eb840ace26325301bc286598aafd67afeb9ce55decde",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/26626449010"
    }
  ]
}