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  "Title": "Discover and Access Single Cell Data Sets in the CELLxGENE Data\nPortal",
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  "Description": "The cellxgene data portal\n(https://cellxgene.cziscience.com/) provides a graphical user\ninterface to collections of single-cell sequence data processed\nin standard ways to 'count matrix' summaries. The cellxgenedp\npackage provides an alternative, R-based interface, allowing\ndata discovery, viewing, and downloading.",
  "License": "Artistic-2.0",
  "Encoding": "UTF-8",
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  "Date/Publication": "2026-06-14 11:11:49 UTC",
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