Package: brgedata 1.35.0

Dolors Pelegri-Siso

brgedata: Exposures, Gene Expression and Methylation data for ilustration purpouses

This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome.

Authors:Dolors Pelegri-Siso [aut, cre], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut]

brgedata_1.35.0.tar.gz
brgedata_1.35.0.tar.gz(r-4.7-any)brgedata_1.35.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
brgedata/json (API)

# Install 'brgedata' in R:

install.packages('brgedata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

brge_expo - 'ExposomeSet' for testing purpouses
brge_gexp - 'ExpressionSet' for testing purpouses
brge_methy - 'GenomicRatioSet' for testing purpouses
brge_prot - 'ExpressionSet' for testing purpouses

On BioConductor:brgedata-1.35.0(data/experiment 3.24)brgedata-1.34.0(data/experiment 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

experimentdata homo_sapiens_data microarraydata methylationarraydata datapkg

4.08 score 12 scripts 0 exports 17 dependencies

Last updated from:d81bdc9de0. Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: yes.

This is a data package. Data packages may be large and do not get checked across all platforms.

Target	Result	Time
bioc-checks	ERROR	252
linux-devel	WARNING	650
source / vignettes	OK	881
linux-release	WARNING	553

Exports:

Dependencies:abind Biobase BiocGenerics DelayedArray generics GenomicRanges IRanges lattice Matrix MatrixGenerics matrixStats S4Arrays S4Vectors Seqinfo SparseArray SummarizedExperiment XVector

brgedata -- data R package with three omic data-set and exposome data-set from the same Spanish pupulation

Rendered fromgeneral_description.Rmdusingknitr::rmarkdown

Last update: 2018-01-26
Started: 2017-12-18

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
'ExposomeSet' for testing purpouses	brge_expo
'ExpressionSet' for testing purpouses	brge_gexp
'GenomicRatioSet' for testing purpouses	brge_methy
'ExpressionSet' for testing purpouses	brge_prot
brgedata	brgedata-package brgedata