| Title: | Exposures, Gene Expression and Methylation data for ilustration purpouses |
|---|---|
| Description: | This package contains several sets of omics data including Gene Expression (ExpressionSet), Methylation (GenomicRatioSet), Proteome and Exposome (ExposomeSet). This data is used in vignettes and exaples at MEAL, MultiDataSet and omicRexposome. |
| Authors: | Dolors Pelegri-Siso [aut, cre], Carlos Ruiz-Arenas [aut], Carles Hernandez-Ferrer [aut], Juan R. Gonzalez [aut] |
| Maintainer: | Dolors Pelegri-Siso <[email protected]> |
| License: | MIT + file LICENSE |
| Version: | 1.35.0 |
| Built: | 2026-10-10 10:50:23 UTC |
| Source: | https://github.com/bioc/brgedata |
ExposomeSet for testing purpousesExposomeSet with full set of 15 exposures grouped in 3 families for
110 individuals.
data("brge_expo")data("brge_expo")
An object of class ExposomeSet of dimension 15 x 110 x 6.
An ExposomeSet object.
ExpressionSet for testing purpousesExpressionSet with full set of 67528 features from Affymetrix
HTA 2.0 for 100 simulated samples.
data("brge_gexp")data("brge_gexp")
An object of class ExpressionSet with 67528 rows and 100 columns.
An ExpressionSet object.
data("brge_gexp") dim(brge_gexp) sampleNames(brge_gexp)data("brge_gexp") dim(brge_gexp) sampleNames(brge_gexp)
GenomicRatioSet for testing purpousesGenomicRatioSet with 476946 features from Illumina 450k
methylation array and 115 simulated samples.
data("brge_methy")data("brge_methy")
An object of class GenomicRatioSet with 476946 rows and 20 columns.
An GenomicRatioSet object.
data("brge_methy") dim(brge_methy) sampleNames(brge_methy)data("brge_methy") dim(brge_methy) sampleNames(brge_methy)
ExpressionSet for testing purpousesExpressionSet with full set of 47 proteines for 90 simulated samples.
data("brge_prot")data("brge_prot")
An object of class ExpressionSet with 47 rows and 90 columns.
An ExpressionSet object.
data("brge_prot") dim(brge_prot) sampleNames(brge_prot)data("brge_prot") dim(brge_prot) sampleNames(brge_prot)