Package: biocGraph 1.75.0

Florian Hahne

biocGraph: Graph examples and use cases in Bioinformatics

This package provides examples and code that make use of the different graph related packages produced by Bioconductor.

Authors:Li Long <[email protected]>, Robert Gentleman <[email protected]>, Seth Falcon <[email protected]> Florian Hahne <[email protected]>

biocGraph_1.75.0.tar.gz
biocGraph_1.75.0.zip(r-4.7)biocGraph_1.75.0.zip(r-4.6)biocGraph_1.75.0.zip(r-4.5)
biocGraph_1.75.0.tgz(r-4.6-any)biocGraph_1.75.0.tgz(r-4.5-any)
biocGraph_1.75.0.tar.gz(r-4.7-any)biocGraph_1.75.0.tar.gz(r-4.6-any)
biocGraph_1.75.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
biocGraph/json (API)

# Install 'biocGraph' in R:
install.packages('biocGraph', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:biocGraph-1.75.0(bioc 3.24)biocGraph-1.74.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

visualizationgraphandnetwork

3.60 score 1 scripts 1 mentions 1 exports 43 dependencies

Last updated from:82db6f65d5. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR187
linux-devel-x86_64NOTE254
source / vignettesOK257
linux-release-x86_64NOTE264
macos-release-arm64NOTE161
macos-oldrel-arm64NOTE223
windows-develNOTE160
windows-releaseNOTE151
windows-oldrelNOTE183
wasm-releaseOK143

Exports:imageMap

Dependencies:annotateAnnotationDbiaskpassBiobaseBiocGenericsBiostringsbitbit64blobcachemclicpp11crayoncurlDBIfastmapgeneplottergenericsgluegraphhttrIRangesjsonliteKEGGRESTlatticelifecyclememoisemimeopensslpkgconfigpngR6RColorBrewerRgraphvizrlangRSQLiteS4VectorsSeqinfosysvctrsXMLxtableXVector

Examples of plotting graphs Using Rgraphviz
Overview | Different layout methods | Subgraphs | Attributes | Layout, rendering and the function agopen | Customized node plots | Special types of graphs | NEW Another workflow to plot a graph | Tooltips and hyperlinks on graphs | Sessioninfo
Rendered frombiocGraph.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

HOWTO layout pathways
Overview | Obtaining the initial graph | Laying out the graph | Working with the layout | Conclusions | Sessioninfo
Rendered fromlayingOutPathways.Rnwusingutils::Sweave

Last update: 2013-11-01
Started: 2013-11-01

Readme and manuals

Help Manual

Help pageTopics
Write an HTML IMG tag together with a MAP image map.imageMap imageMap,graph,connection,list,character-method imageMap,graph-method imageMap,Ragraph,connection,list,character-method imageMap,Ragraph-method imageMap-methods