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  "Title": "Graph examples and use cases in Bioinformatics",
  "Description": "This package provides examples and code that make use of\nthe different graph related packages produced by Bioconductor.",
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  "Date": "2012-04-27",
  "Author": "Li Long <li.long@isb-sib.ch>, Robert Gentleman\n<rgentlem@fhcrc.org>, Seth Falcon <sethf@fhcrc.org> Florian\nHahne <fhahne@fhcrc.org>",
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