{ "_id": "6ae758771e2c7b3a4f53019b", "Package": "biocGraph", "Title": "Graph examples and use cases in Bioinformatics", "Description": "This package provides examples and code that make use of\nthe different graph related packages produced by Bioconductor.", "Version": "1.75.0", "Date": "2012-04-27", "Author": "Li Long , Robert Gentleman\n, Seth Falcon Florian\nHahne ", "Maintainer": "Florian Hahne ", "License": "Artistic-2.0", "LazyLoad": "Yes", "biocViews": "Visualization, GraphAndNetwork", "Config/pak/sysreqs": "libpng-dev libxml2-dev libssl-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:32:26 UTC", "RemoteUrl": "https://github.com/bioc/biocGraph", "RemoteRef": "HEAD", "RemoteSha": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "NeedsCompilation": "no", "Packaged": { "Date": "2026-11-01 13:24:16 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "biocGraph_1.75.0.tar.gz", "_fileid": "https://r2.ropensci.org/746315a6816853b70bf13f80e4c6e903a89570459e58ce41d7a8a2d6144a0640", "_filesize": 545137, "_sha256": "746315a6816853b70bf13f80e4c6e903a89570459e58ce41d7a8a2d6144a0640", "_expires": "2027-02-09T15:19:17.000Z", "_created": "2026-11-01T13:24:16.000Z", "_published": "2026-11-01T15:19:19.317Z", "_upstream": "https://github.com/bioc/biocGraph", "_status": "success", "_maintainer": { "name": "Florian Hahne", "email": "florian.hahne@novartis.com", "login": "fhahne", "description": "", "uuid": 4182186 }, "_jobs": [ { "job": 124861558990, "time": 170, "config": "bioc-checks", "r": "4.6.2", "check": "ERROR", "artifact": "13086288681" }, { "job": 124861558942, "time": 259, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086184186" }, { "job": 124861558894, "time": 298, "config": "linux-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13086607401" }, { "job": 124861558977, "time": 204, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "13088732594" }, { "job": 124861558968, "time": 171, "config": "macos-release-arm64", "r": "4.6.2", "check": "NOTE", "artifact": "13089446280" }, { "job": 124858153618, "time": 277, "config": "source", "r": "4.6.2", "check": "OK", "artifact": "13085322742" }, { "job": 124861558938, "time": 119, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "13086308390" }, { "job": 124861558965, "time": 154, "config": "windows-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "13086140962" }, { "job": 124861559074, "time": 159, "config": "windows-oldrel-x86_64", "r": "4.5.3", "check": "NOTE", "artifact": "13085621341" }, { "job": 124861559037, "time": 153, "config": "windows-release-x86_64", "r": "4.6.2", "check": "NOTE", "artifact": "13085219840" } ], "_bioccheck": { "error": 2, "warning": 3, "note": 11 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253", "_commit": { "id": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379546 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "Rgraphviz", "role": "Depends" }, { "package": "graph", "role": "Depends" }, { "package": "Rgraphviz", "role": "Imports" }, { "package": "geneplotter", "role": "Imports" }, { "package": "graph", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "methods", "role": "Imports" }, { "package": "fibroEset", "role": "Suggests" }, { "package": "geneplotter", "role": "Suggests" }, { "package": "hgu95av2.db", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.75.0", "bioc": "3.24", "repository": "bioc" }, { "branch": "release", "version": "1.74.0", "bioc": "3.23", "repository": "bioc" } ], "_topics": [ "visualization", "graphandnetwork" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 482, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 760, "source": "https://www.bioconductor.org/packages/stats/bioc/biocGraph" }, "_mentions": 1, "_searchresults": 5, "_abi": { "exports": [], "imports": [ { "key": "geneplotter::generic:imageMap", "hash": "6061d2cc786d176b" } ] }, "_rbuild": "4.6.2", "_assets": [ "extra/biocGraph.html", "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf" ], "_realowner": "bioc", "_cranurl": false, "_exports": [ "imageMap" ], "_help": [ { "page": "imageMap", "title": "Write an HTML IMG tag together with a MAP image map.", "topics": [ "imageMap", "imageMap,graph,connection,list,character-method", "imageMap,graph-method", "imageMap,Ragraph,connection,list,character-method", "imageMap,Ragraph-method", "imageMap-methods" ] } ], "_rundeps": [ "annotate", "AnnotationDbi", "askpass", "Biobase", "BiocBaseUtils", "BiocGenerics", "Biostrings", "bit", "bit64", "blob", "cachem", "cli", "cpp11", "crayon", "curl", "DBI", "fastmap", "geneplotter", "generics", "glue", "graph", "httr", "IRanges", "jsonlite", "KEGGREST", "lattice", "lifecycle", "memoise", "mime", "openssl", "pkgconfig", "png", "R6", "RColorBrewer", "Rgraphviz", "rlang", "RSQLite", "S4Vectors", "Seqinfo", "sys", "vctrs", "XML", "xtable", "XVector" ], "_vignettes": [ { "source": "biocGraph.Rnw", "filename": "biocGraph.pdf", "title": "Examples of plotting graphs Using Rgraphviz", "engine": "utils::Sweave", "headings": [ "Overview", "Different layout methods", "Subgraphs", "Attributes", "Layout, rendering and the function agopen", "Customized node plots", "Special types of graphs", "NEW Another workflow to plot a graph ", "Tooltips and hyperlinks on graphs", "Sessioninfo" ], "created": "2013-11-01 20:01:11", "modified": "2013-11-01 20:01:11", "commits": 1 }, { "source": "layingOutPathways.Rnw", "filename": "layingOutPathways.pdf", "title": "HOWTO layout pathways", "engine": "utils::Sweave", "headings": [ "Overview", "Obtaining the initial graph", "Laying out the graph", "Working with the layout", "Conclusions", "Sessioninfo" ], "created": "2013-11-01 20:01:11", "modified": "2013-11-01 20:01:11", "commits": 1 } ], "_score": 3.6020599913279625, "_indexed": true, "_nocasepkg": "biocgraph", "_universes": [ "bioc", "fhahne" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.75.0", "date": "2026-11-01T13:57:36.000Z", "distro": "resolute", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/ce214e2f606ceab0e8588f2dd246eda49db14bc3a2e8ea17ce6da5422e813bf7", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.6.2", "os": "linux", "version": "1.75.0", "date": "2026-11-01T13:58:00.000Z", "distro": "resolute", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/88f14c5834c1d0e9c4517c9711f00c317354bff2c1901d94ae2b35cd5ad93b52", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.5.3", "os": "mac", "version": "1.75.0", "date": "2026-11-01T15:17:42.000Z", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/882c39b735643b173cdb257c1d7909a966997d1b14cf6589b596d2d5e49f7782", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.6.2", "os": "mac", "version": "1.75.0", "date": "2026-11-01T15:17:36.000Z", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/9bd8df86ce2f4d5cf30fbb67d62336b72b23f2d5077107a7625386f3a68c2503", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.6.0", "os": "wasm", "version": "1.75.0", "date": "2026-11-01T13:55:58.000Z", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/9240f9fedf0aa11d8b6a9b2403a4848b5f00e5688d30a93cf1ae29e30d6472d0", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.7.0", "os": "win", "version": "1.75.0", "date": "2026-11-01T13:35:00.000Z", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/93ccbcb88be5c1ddbbca9ca272c3d1fcc6faee1e3acc467e42036116e454aeca", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.5.3", "os": "win", "version": "1.75.0", "date": "2026-11-01T13:35:02.000Z", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/9b494fff085863875cfe2aec7f73c0f0bc73d3ab3bc2d970ec856665164c6304", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" }, { "r": "4.6.2", "os": "win", "version": "1.75.0", "date": "2026-11-01T13:34:59.000Z", "commit": "82db6f65d5a8beb19b2d1e7f4102a4c0415826c3", "fileid": "https://r2.ropensci.org/a320ab3752cd7f310a58ba74de24a4a4e8ef48f8672a73fcf3d64e482ee0bc5d", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41309426253" } ] }