Package: anglemania 1.3.0

Aaron Kollotzek

anglemania: Feature Extraction for scRNA-seq Dataset Integration

anglemania extracts genes from multi-batch scRNA-seq experiments for downstream dataset integration. It shows improvement over the conventional usage of highly-variable genes for many integration tasks. We leverage gene-gene correlations that are stable across batches to identify biologically informative genes which are less affected by batch effects. Currently, its main use is for single-cell RNA-seq dataset integration, but it can be applied for other multi-batch downstream analyses such as NMF.

Authors:Aaron Kollotzek [aut, cre], Vedran Franke [aut], Artem Baranovskii [aut], Altuna Akalin [aut], SFB1588 [fnd]

anglemania_1.3.0.tar.gz
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anglemania_1.3.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
anglemania/json (API)
NEWS

# Install 'anglemania' in R:
install.packages('anglemania', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bimsbbioinfo/anglemania/issues

Uses libs:
  • c++– GNU Standard C++ Library v3

On BioConductor:anglemania-1.3.0(bioc 3.24)anglemania-1.2.0(bioc 3.23)

singlecellbatcheffectmultiplecomparisonfeatureextractioncpp

5.51 score 4 stars 2 scripts 222 downloads 23 exports 69 dependencies

Last updated from:097e32809c. Checks:12 NOTE, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE202
linux-devel-arm64NOTE319
linux-devel-x86_64NOTE354
source / vignettesOK582
linux-release-arm64NOTE327
linux-release-x86_64NOTE392
macos-release-arm64NOTE198
macos-release-x86_64NOTE461
macos-oldrel-arm64NOTE258
macos-oldrel-x86_64NOTE455
windows-develNOTE260
windows-releaseNOTE267
windows-oldrelNOTE346
wasm-releaseOK198

Exports:add_unique_batch_keyanglemaniabig_cor_no_warningbig_crossprodSelf_no_warningbig_mat_list_meanbig_scale_no_warningcheck_paramsCutBySizeextract_anglesextract_rows_for_unique_genesfactoriseget_anglemania_genesget_anglemania_stats_dfget_dstatget_intersect_genesget_list_statsnormalize_matrixpermute_nonzeroprefilter_anglreplace_with_nasce_exampleselect_genessparse_to_fbm

Dependencies:abindbackportsbigassertrbigparallelrbigstatsrBiobaseBiocGenericsbitcheckmateclicodetoolscowplotcpp11DelayedArraydigestdoParalleldplyrfarverffflockforeachgenericsGenomicRangesggplot2gluegtableIRangesisobanditeratorslabelinglatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsparallellypbapplypillarpkgconfigpspurrrR6RColorBrewerRcppRcppArmadilloRcppEigenRhpcBLASctlrlangrmioRSpectraS4ArraysS4VectorsS7scalesSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimenttibbletidyrtidyselectutf8vctrsviridisLitewithrXVector

anglemania Tutorial

Aaron Kollotzek, Vedran Franke, Artem Baranovskii, Altuna Akalin

Rendered fromanglemania_tutorial.Rmdusingknitr::rmarkdownon May 29 2026.

Last update: 2025-10-14
Started: 2024-11-15