Differential cell-type-specific allelic imbalance with airpart
Real data example | Simulated data example I | Simulation set-up | Required input data | Create allelic ratio matrix | Quality control steps | QC on cells | QC on genes | Gene clustering | Running airpart for allelic imbalance across groups of cells | Simple summary table of allelic ratio | Experiment-wide beta-binomial over-dispersion | Modeling using fused lasso with binomial likelihood | Consensus partition | Modeling using pairwise Mann-Whitney-Wilcoxon extension | Calculating allelic ratio estimates via beta-binomial model | Derive statistical inference | Allelic ratio partition and posterior inference, example II | Session Info