Package: ZarrArray 1.1.0

Hervé Pagès

ZarrArray: Bring Zarr datasets in R as DelayedArray objects

The ZarrArray package leverages the Rarr package to bring Zarr datasets in R as DelayedArray objects. The main class in the package is the ZarrArray class. A ZarrArray object is an array-like object that represents a Zarr dataset in R. ZarrArray objects are DelayedArray derivatives and therefore support all operations (delayed or block-processed) supported by DelayedArray objects.

Authors:Hervé Pagès [aut, cre], Mike Smith [aut], Hugo Gruson [aut], Artür Manukyan [aut], Levi Waldron [fnd]

ZarrArray_1.1.0.tar.gz
ZarrArray_1.1.0.zip(r-4.7)ZarrArray_1.1.0.zip(r-4.6)ZarrArray_1.1.0.zip(r-4.5)
ZarrArray_1.1.0.tgz(r-4.6-any)ZarrArray_1.1.0.tgz(r-4.5-any)
ZarrArray_1.1.0.tar.gz(r-4.7-any)ZarrArray_1.1.0.tar.gz(r-4.6-any)
ZarrArray_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ZarrArray/json (API)

# Install 'ZarrArray' in R:

install.packages('ZarrArray', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/zarrarray/issues

On BioConductor:ZarrArray-1.1.0(bioc 3.24)ZarrArray-1.0.0(bioc 3.23)

infrastructure datarepresentation dataimport bioconductor-package core-package u24ca289073

6.62 score 5 stars 4 packages 3 scripts 21 exports 39 dependencies

Last updated from:498be8cf80. Checks:1 WARNING, 2 NOTE, 2 OK, 5 ERROR. Indexed: yes.

Target	Result	Time
bioc-checks	WARNING	197
linux-devel-x86_64	NOTE	284
source / vignettes	OK	249
linux-release-x86_64	NOTE	323
macos-release-arm64	ERROR	168
macos-oldrel-arm64	ERROR	135
windows-devel	ERROR	182
windows-release	ERROR	180
windows-oldrel	ERROR	224
wasm-release	OK	171

Exports:chunkdim coerce DelayedArray extract_array get_writeZarrArray_auto_chunkdim get_writeZarrArray_auto_path get_writeZarrArray_chunk_maxlen get_writeZarrArray_chunk_shape get_writeZarrArray_dump_dir matrixClass path set_writeZarrArray_chunk_maxlen set_writeZarrArray_chunk_shape set_writeZarrArray_dump_dir show type write_block writeZarrArray ZarrArray ZarrArraySeed ZarrRealizationSink

Dependencies:abind askpass base64enc BiocGenerics cli curl DelayedArray digest generics glue grumpy httr2 IRanges jsonlite lattice lifecycle magrittr Matrix MatrixGenerics matrixStats openssl paws.common paws.storage R.methodsS3 R.oo R.utils R6 rappdirs Rarr Rcpp rlang S4Arrays S4Vectors SparseArray sys vctrs withr xml2 XVector

ZarrArray overview

Rendered fromZarrArray_overview.Rmdusingknitr::rmarkdown

Last update: 2026-04-04
Started: 2026-01-28

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Write an array-like object to disk in Zarr format	chunkdim,ZarrRealizationSink-method class:ZarrRealizationSink coerce,ANY,ZarrArray-method coerce,DelayedArray,ZarrArray-method coerce,DelayedMatrix,ZarrMatrix-method coerce,ZarrRealizationSink,DelayedArray-method coerce,ZarrRealizationSink,ZarrArray-method coerce,ZarrRealizationSink,ZarrArraySeed-method type,ZarrRealizationSink-method writeZarrArray write_block,ZarrRealizationSink-method ZarrRealizationSink ZarrRealizationSink-class
Control writeZarrArray's automatic argument values	get_writeZarrArray_auto_chunkdim get_writeZarrArray_auto_path get_writeZarrArray_chunk_maxlen get_writeZarrArray_chunk_shape get_writeZarrArray_dump_dir set_writeZarrArray_chunk_maxlen set_writeZarrArray_chunk_shape set_writeZarrArray_dump_dir writeZarrArray-auto-args writeZarrArray_auto_args
Zarr datasets as DelayedArray objects	class:ZarrArray class:ZarrMatrix coerce,ZarrArray,ZarrMatrix-method coerce,ZarrMatrix,ZarrArray-method DelayedArray,ZarrArraySeed-method matrixClass,ZarrArray-method ZarrArray ZarrArray-class ZarrMatrix ZarrMatrix-class
ZarrArraySeed objects	chunkdim,ZarrArraySeed-method class:ZarrArraySeed dim,ZarrArraySeed-method extract_array,ZarrArraySeed-method path,ZarrArraySeed-method show,ZarrArraySeed-method type,ZarrArraySeed-method ZarrArraySeed ZarrArraySeed-class