Package: ZarrArray 1.1.8

Hervé Pagès

ZarrArray: Bring Zarr datasets in R as DelayedArray objects

The ZarrArray package leverages the Rarr package to bring Zarr datasets in R as DelayedArray objects. The main class in the package is the ZarrArray class. A ZarrArray object is an array-like object that represents a Zarr dataset in R. ZarrArray objects are DelayedArray derivatives and therefore support all operations (delayed or block-processed) supported by DelayedArray objects.

Authors:Hervé Pagès [aut, cre], Mike Smith [aut], Hugo Gruson [aut], Artür Manukyan [aut], Levi Waldron [fnd]

ZarrArray_1.1.8.tar.gz
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ZarrArray_1.1.8.tgz(r-4.6-any)ZarrArray_1.1.8.tgz(r-4.5-any)
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
ZarrArray/json (API)

# Install 'ZarrArray' in R:
install.packages('ZarrArray', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/bioconductor/zarrarray/issues

On BioConductor:ZarrArray-1.1.7(bioc 3.24)ZarrArray-1.0.1(bioc 3.23)

infrastructuredatarepresentationdataimportbioconductor-packagecore-packageu24ca289073

6.52 score 5 stars 8 packages 13 scripts 748 downloads 30 exports 38 dependencies

Last updated from:ae4f2a416b. Checks:5 WARNING, 4 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING146
linux-develWARNING239
source / vignettesERROR221
linux-releaseERROR284
macos-releaseERROR229
macos-oldrelWARNING192
windows-develWARNING195
windows-releaseERROR144
windows-oldrelWARNING174
wasm-releaseOK112

Exports:chunkdimcoerceDelayedArrayextract_arrayextract_sparse_arrayget_writeZarrArray_auto_chunkdimget_writeZarrArray_auto_pathget_writeZarrArray_chunk_maxlenget_writeZarrArray_chunk_shapeget_writeZarrArray_dump_dirgroupis_sparsematrixClassnzcountpathset_writeZarrArray_chunk_maxlenset_writeZarrArray_chunk_shapeset_writeZarrArray_dump_dirshowtt.CSC_ZarrSparseMatrixSeedt.CSR_ZarrSparseMatrixSeedtypewrite_blockwriteZarrArrayZarrArrayZarrArraySeedZarrRealizationSinkZarrSparseMatrixZarrSparseMatrixSeed

Dependencies:abindaskpassbase64encBiocGenericsclicurlDelayedArraydigestgenericsgluegrumpyhttr2IRangesjsonlitelatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsopensslpaws.commonpaws.storageR.methodsS3R.ooR.utilsR6RarrRcpprlangS4ArraysS4VectorsSparseArraysysvctrswithrxml2XVector

Readme and manuals

Help Manual

Help pageTopics
Write an array-like object to disk in Zarr formatchunkdim,ZarrRealizationSink-method class:ZarrRealizationSink coerce,ANY,ZarrArray-method coerce,DelayedArray,ZarrArray-method coerce,DelayedMatrix,ZarrMatrix-method coerce,ZarrRealizationSink,DelayedArray-method coerce,ZarrRealizationSink,ZarrArray-method coerce,ZarrRealizationSink,ZarrArraySeed-method type,ZarrRealizationSink-method writeZarrArray write_block,ZarrRealizationSink-method ZarrRealizationSink ZarrRealizationSink-class
Control writeZarrArray's automatic argument valuesget_writeZarrArray_auto_chunkdim get_writeZarrArray_auto_path get_writeZarrArray_chunk_maxlen get_writeZarrArray_chunk_shape get_writeZarrArray_dump_dir set_writeZarrArray_chunk_maxlen set_writeZarrArray_chunk_shape set_writeZarrArray_dump_dir writeZarrArray-auto-args writeZarrArray_auto_args
Zarr datasets as DelayedArray objectsclass:ZarrArray class:ZarrMatrix coerce,ZarrArray,ZarrMatrix-method coerce,ZarrMatrix,ZarrArray-method DelayedArray,ZarrArraySeed-method matrixClass,ZarrArray-method ZarrArray ZarrArray-class ZarrMatrix ZarrMatrix-class
ZarrArraySeed objectschunkdim,ZarrArraySeed-method class:ZarrArraySeed dim,ZarrArraySeed-method extract_array,ZarrArraySeed-method path,ZarrArraySeed-method show,ZarrArraySeed-method type,ZarrArraySeed-method ZarrArraySeed ZarrArraySeed-class
HDF5 sparse matrices as DelayedMatrix objectsclass:ZarrSparseMatrix DelayedArray,ZarrSparseMatrixSeed-method nzcount,ZarrSparseMatrix-method ZarrSparseMatrix ZarrSparseMatrix-class
ZarrSparseMatrixSeed objectschunkdim,CSC_ZarrSparseMatrixSeed-method chunkdim,CSR_ZarrSparseMatrixSeed-method class:CSC_ZarrSparseMatrixSeed class:CSR_ZarrSparseMatrixSeed class:ZarrSparseMatrixSeed CSC_ZarrSparseMatrixSeed CSC_ZarrSparseMatrixSeed-class CSR_ZarrSparseMatrixSeed CSR_ZarrSparseMatrixSeed-class dim,ZarrSparseMatrixSeed-method dimnames,ZarrSparseMatrixSeed-method extract_array,ZarrSparseMatrixSeed-method extract_sparse_array,CSC_ZarrSparseMatrixSeed-method extract_sparse_array,CSR_ZarrSparseMatrixSeed-method group,ZarrSparseMatrixSeed-method is_sparse,ZarrSparseMatrixSeed-method nzcount,ZarrSparseMatrixSeed-method path,ZarrSparseMatrixSeed-method show,ZarrSparseMatrixSeed-method t,CSC_ZarrSparseMatrixSeed-method t,CSR_ZarrSparseMatrixSeed-method t.CSC_ZarrSparseMatrixSeed t.CSR_ZarrSparseMatrixSeed ZarrSparseMatrixSeed ZarrSparseMatrixSeed-class