{ "_id": "6a2162cccd65a98ecbd3356b", "Package": "ZarrArray", "Title": "Bring Zarr datasets in R as DelayedArray objects", "Description": "The ZarrArray package leverages the Rarr package to bring\nZarr datasets in R as DelayedArray objects. The main class in\nthe package is the ZarrArray class. A ZarrArray object is an\narray-like object that represents a Zarr dataset in R.\nZarrArray objects are DelayedArray derivatives and therefore\nsupport all operations (delayed or block-processed) supported\nby DelayedArray objects.", "biocViews": "Infrastructure, DataRepresentation, DataImport", "URL": "https://bioconductor.org/packages/ZarrArray", "BugReports": "https://github.com/Bioconductor/ZarrArray/issues", "Version": "1.1.0", "License": "Artistic-2.0", "Encoding": "UTF-8", "Authors@R": "c(\nperson(\"Hervé\", \"Pagès\", role=c(\"aut\", \"cre\"),\nemail=\"hpages.on.github@gmail.com\",\ncomment=c(ORCID=\"0009-0002-8272-4522\")),\nperson(\"Mike\", \"Smith\", role=\"aut\",\ncomment=c(ORCID=\"0000-0002-7800-3848\")),\nperson(\"Hugo\", \"Gruson\", role=\"aut\",\nemail=\"hugo.gruson@embl.de\",\ncomment=c(ORCID=\"0000-0002-4094-1476\")),\nperson(\"Artür\", \"Manukyan\", role=\"aut\",\nemail=\"artur-man@hotmail.com\",\ncomment=c(ORCID=\"0000-0002-0441-9517\")),\nperson(\"Levi\", \"Waldron\", role=\"fnd\",\nemail=\"levi.waldron@sph.cuny.edu\",\ncomment=c(ORCID=\"0000-0003-2725-0694\")))", "VignetteBuilder": "knitr", "Collate": "utils.R options.R ZarrArraySeed-class.R ZarrArray-class.R\nwriteZarrArray-auto-args.R writeZarrArray.R zzz.R", "Config/pak/sysreqs": "libblosc-dev libxml2-dev libzstd-dev libssl-dev\nzlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 13:06:48 UTC", "RemoteUrl": "https://github.com/bioc/ZarrArray", "RemoteRef": "HEAD", "RemoteSha": "498be8cf8063a7781a969036f129840a377e6c48", "NeedsCompilation": "no", "Packaged": { "Date": "2026-06-04 11:12:42 UTC", "User": "root" }, "Author": "Hervé Pagès [aut, cre] (ORCID: ),\nMike Smith [aut] (ORCID: ),\nHugo Gruson [aut] (ORCID: ),\nArtür Manukyan [aut] (ORCID: ),\nLevi Waldron [fnd] (ORCID: )", "Maintainer": "Hervé Pagès ", "MD5sum": "5af30ce77b66c3728b0599b172e2c3e7", "_user": "bioc", "_type": "src", "_file": "ZarrArray_1.1.0.tar.gz", "_fileid": "613dcf094e7e1ee6bdb6f97457d2a0b3aa9ed551b3287cc14ea4001916900fce", "_filesize": 148209, "_sha256": "613dcf094e7e1ee6bdb6f97457d2a0b3aa9ed551b3287cc14ea4001916900fce", "_created": "2026-06-04T11:12:42.000Z", "_published": "2026-06-04T11:34:36.709Z", "_jobs": [ { "job": 79506483692, "time": 175, "config": "bioc-checks", "r": "4.6.0", "check": "NOTE", "artifact": "7410005954" }, { "job": 79506483615, "time": 257, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7410032852" }, { "job": 79506483640, "time": 257, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7410032891" }, { "job": 79506483658, "time": 162, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "ERROR", "artifact": "7410337465" }, { "job": 79506483665, "time": 136, "config": "macos-release-arm64", "r": "4.6.0", "check": "ERROR", "artifact": "7410350758" }, { "job": 79505941787, "time": 202, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7409948558" }, { "job": 79506483588, "time": 136, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7409992797" }, { "job": 79506483632, "time": 186, "config": "windows-devel", "r": "4.7.0", "check": "ERROR", "artifact": "7410010017" }, { "job": 79506483778, "time": 209, "config": "windows-oldrel", "r": "4.5.3", "check": "ERROR", "artifact": "7410019125" }, { "job": 79506483681, "time": 192, "config": "windows-release", "r": "4.6.0", "check": "ERROR", "artifact": "7410011696" } ], "_bioccheck": { "error": 0, "warning": 0, "note": 3 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/ZarrArray", "_commit": { "id": "498be8cf8063a7781a969036f129840a377e6c48", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777381608 }, "_maintainer": { "name": "Hervé Pagès", "email": "hpages.on.github@gmail.com", "login": "hpages", "linkedin": "in/hervé-pagès-5038527", "description": "", "uuid": 8810451 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.4", "role": "Depends" }, { "package": "methods", "role": "Depends" }, { "package": "SparseArray", "role": "Depends" }, { "package": "DelayedArray", "role": "Depends" }, { "package": "stats", "role": "Imports" }, { "package": "tools", "role": "Imports" }, { "package": "BiocGenerics", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "IRanges", "role": "Imports" }, { "package": "S4Arrays", "role": "Imports" }, { "package": "Rarr", "version": ">= 1.11.33", "role": "Imports" }, { "package": "paws.storage", "role": "Suggests" }, { "package": "HDF5Array", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" }, { "package": "knitr", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 4, "_updates": [ { "week": "2026-04", "n": 1 }, { "week": "2026-05", "n": 8 }, { "week": "2026-14", "n": 4 }, { "week": "2026-15", "n": 1 }, { "week": "2026-16", "n": 1 }, { "week": "2026-17", "n": 1 }, { "week": "2026-18", "n": 3 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.1.0", "bioc": "3.24" }, { "branch": "release", "version": "1.0.0", "bioc": "3.23" } ], "_topics": [ "infrastructure", "datarepresentation", "dataimport", "bioconductor-package", "core-package", "u24ca289073" ], "_stars": 5, "_contributors": [ { "user": "hpages", "count": 16, "uuid": 8810451 }, { "user": "jwokaty", "count": 2, "uuid": 1744257 }, { "user": "artur-man", "count": 2, "uuid": 39335576 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 628, "source": "https://www.bioconductor.org/packages/stats/bioc/ZarrArray" }, "_devurl": "https://github.com/bioconductor/zarrarray", "_searchresults": 3, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/ZarrArray.html", "manual.pdf" ], "_homeurl": "https://github.com/bioconductor/zarrarray", "_realowner": "bioc", "_cranurl": false, "_exports": [ "chunkdim", "coerce", "DelayedArray", "extract_array", "get_writeZarrArray_auto_chunkdim", "get_writeZarrArray_auto_path", "get_writeZarrArray_chunk_maxlen", "get_writeZarrArray_chunk_shape", "get_writeZarrArray_dump_dir", "matrixClass", "path", "set_writeZarrArray_chunk_maxlen", "set_writeZarrArray_chunk_shape", "set_writeZarrArray_dump_dir", "show", "type", "write_block", "writeZarrArray", "ZarrArray", "ZarrArraySeed", "ZarrRealizationSink" ], "_help": [ { "page": "writeZarrArray", "title": "Write an array-like object to disk in Zarr format", "topics": [ "chunkdim,ZarrRealizationSink-method", "class:ZarrRealizationSink", "coerce,ANY,ZarrArray-method", "coerce,DelayedArray,ZarrArray-method", "coerce,DelayedMatrix,ZarrMatrix-method", "coerce,ZarrRealizationSink,DelayedArray-method", "coerce,ZarrRealizationSink,ZarrArray-method", "coerce,ZarrRealizationSink,ZarrArraySeed-method", "type,ZarrRealizationSink-method", "writeZarrArray", "write_block,ZarrRealizationSink-method", "ZarrRealizationSink", "ZarrRealizationSink-class" ] }, { "page": "writeZarrArray-auto-args", "title": "Control writeZarrArray's automatic argument values", "topics": [ "get_writeZarrArray_auto_chunkdim", "get_writeZarrArray_auto_path", "get_writeZarrArray_chunk_maxlen", "get_writeZarrArray_chunk_shape", "get_writeZarrArray_dump_dir", "set_writeZarrArray_chunk_maxlen", "set_writeZarrArray_chunk_shape", "set_writeZarrArray_dump_dir", "writeZarrArray-auto-args", "writeZarrArray_auto_args" ] }, { "page": "ZarrArray-class", "title": "Zarr datasets as DelayedArray objects", "topics": [ "class:ZarrArray", "class:ZarrMatrix", "coerce,ZarrArray,ZarrMatrix-method", "coerce,ZarrMatrix,ZarrArray-method", "DelayedArray,ZarrArraySeed-method", "matrixClass,ZarrArray-method", "ZarrArray", "ZarrArray-class", "ZarrMatrix", "ZarrMatrix-class" ] }, { "page": "ZarrArraySeed-class", "title": "ZarrArraySeed objects", "topics": [ "chunkdim,ZarrArraySeed-method", "class:ZarrArraySeed", "dim,ZarrArraySeed-method", "extract_array,ZarrArraySeed-method", "path,ZarrArraySeed-method", "show,ZarrArraySeed-method", "type,ZarrArraySeed-method", "ZarrArraySeed", "ZarrArraySeed-class" ] } ], "_readme": "https://github.com/bioc/ZarrArray/raw/HEAD/README.md", "_rundeps": [ "abind", "askpass", "base64enc", "BiocGenerics", "cli", "curl", "DelayedArray", "digest", "generics", "glue", "grumpy", "httr2", "IRanges", "jsonlite", "lattice", "lifecycle", "magrittr", "Matrix", "MatrixGenerics", "matrixStats", "openssl", "paws.common", "paws.storage", "R.methodsS3", "R.oo", "R.utils", "R6", "rappdirs", "Rarr", "Rcpp", "rlang", "S4Arrays", "S4Vectors", "SparseArray", "sys", "vctrs", "withr", "xml2", "XVector" ], "_vignettes": [ { "source": "ZarrArray_overview.Rmd", "filename": "ZarrArray_overview.html", "title": "ZarrArray overview", "author": "Hervé Pagès", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Install and load the package", "ZarrArray objects", "Construction", "Array and matrix operations", "Other operations", "Write an array-like object to disk in Zarr format", "Session information" ], "created": "2026-01-28 21:06:31", "modified": "2026-04-04 00:09:37", "commits": 5 } ], "_score": 6.623249290397901, "_indexed": true, "_nocasepkg": "zarrarray", "_universes": [ "bioc", "hpages", "bioconductor" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.1.0", "date": "2026-06-04T11:15:55.000Z", "distro": "noble", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "fa1e862b486cfdae4e8c9c4ac693a436ad2d8032848430eedcc8ad8ee834d0c3", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.6.0", "os": "linux", "version": "1.1.0", "date": "2026-06-04T11:15:41.000Z", "distro": "noble", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "3de4a50434841c09cb01dd65150dc68d2ab6c5515309d6ab9b5724b43cb86ab1", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.5.3", "os": "mac", "version": "1.1.0", "date": "2026-06-04T11:32:25.000Z", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "57bbab0038ebc12c2438fc064c0a40a08bb2da5529711e187207e9cab55c5888", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.6.0", "os": "mac", "version": "1.1.0", "date": "2026-06-04T11:33:14.000Z", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "d0f2b21d1bab6bf74cc0df495af479bde91c20543931c038bcafd62f6bf16658", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.6.0", "os": "wasm", "version": "1.1.0", "date": "2026-06-04T11:15:24.000Z", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "ba842660f4450ef15b1cabc8d44c0e390f5d4e92629dc9643a55a5f29efcc829", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.7.0", "os": "win", "version": "1.1.0", "date": "2026-06-04T11:14:24.000Z", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "cbcdd8b92397c8c8e30a34e21ce01c076ec1ff12dac33aae674b52d9906f0b5f", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.5.3", "os": "win", "version": "1.1.0", "date": "2026-06-04T11:14:48.000Z", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "22e1fd2e6419a6427fcd3e36be4bb38dadb2f6c2478ba0caf37e1ba6d0d60bc8", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" }, { "r": "4.6.0", "os": "win", "version": "1.1.0", "date": "2026-06-04T11:14:41.000Z", "commit": "498be8cf8063a7781a969036f129840a377e6c48", "fileid": "22f6016c64e63e152303eb3f3b7262b3552e874e4b8beffee8e51d0d0bf27f1d", "status": "failure", "check": "ERROR", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26948057309" } ] }