Package: TurboNorm 1.55.0

Maarten van Iterson

TurboNorm: A fast scatterplot smoother suitable for microarray normalization

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Authors:Maarten van Iterson and Chantal van Leeuwen

TurboNorm_1.55.0.tar.gz
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TurboNorm.pdf |TurboNorm.html✨
TurboNorm/json (API)
NEWS

# Install 'TurboNorm' in R:

install.packages('TurboNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

methylation - CpG island DNA methylation array data

On BioConductor:TurboNorm-1.55.0(bioc 3.21)TurboNorm-1.54.0(bioc 3.20)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray onechannel twochannel preprocessing dnamethylation cpgisland methylationarray normalization

3.30 score 1 scripts 296 downloads 5 exports 12 dependencies

Last updated 4 months agofrom:0c415666c8. Checks:1 OK, 8 NOTE, 2 ERROR. Indexed: yes.

Target	Result	Latest binary
Doc / Vignettes	OK	Jan 29 2025
R-4.5-win-x86_64	NOTE	Jan 29 2025
R-4.5-mac-x86_64	ERROR	Jan 29 2025
R-4.5-mac-aarch64	ERROR	Jan 29 2025
R-4.5-linux-x86_64	NOTE	Jan 29 2025
R-4.4-win-x86_64	NOTE	Jan 29 2025
R-4.4-mac-x86_64	NOTE	Jan 29 2025
R-4.4-mac-aarch64	NOTE	Jan 29 2025
R-4.3-win-x86_64	NOTE	Jan 29 2025
R-4.3-mac-x86_64	NOTE	Jan 29 2025
R-4.3-mac-aarch64	NOTE	Jan 29 2025

Exports:normalize.AffyBatch.pspline normalize.pspline panel.pspline pspline turbotrend

Dependencies:affy affyio Biobase BiocGenerics BiocManager convert generics lattice limma marray preprocessCore statmod

TurboNorm Overview

Rendered fromturbonorm.Rnwusingutils::Sweaveon Jan 29 2025.

Last update: 2013-10-26
Started: 2013-10-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A fast scatterplot smoother with applications for microarray normalization	TurboNorm-package
CpG island DNA methylation array data	methylation
Functions for single-colour microarray data normalization using the P-splines	normalize.AffyBatch.pspline normalize.pspline
Panel function for adding a P-spline smoothed curves to a lattice graphics panel	panel.pspline
Function for two-colour microarray data normalization using the P-splines	pspline
turbotrend: a fast scatterplot smoother	turbotrend