Package: TurboNorm 1.61.0

Maarten van Iterson

TurboNorm: A fast scatterplot smoother suitable for microarray normalization

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Authors:Maarten van Iterson and Chantal van Leeuwen

TurboNorm_1.61.0.tar.gz
TurboNorm_1.61.0.zip(r-4.7)TurboNorm_1.61.0.zip(r-4.6)TurboNorm_1.61.0.zip(r-4.5)
TurboNorm_1.61.0.tgz(r-4.6-x86_64)TurboNorm_1.61.0.tgz(r-4.6-arm64)TurboNorm_1.61.0.tgz(r-4.5-x86_64)TurboNorm_1.61.0.tgz(r-4.5-arm64)
TurboNorm_1.61.0.tar.gz(r-4.7-arm64)TurboNorm_1.61.0.tar.gz(r-4.7-x86_64)TurboNorm_1.61.0.tar.gz(r-4.6-arm64)TurboNorm_1.61.0.tar.gz(r-4.6-x86_64)
TurboNorm_1.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TurboNorm/json (API)

# Install 'TurboNorm' in R:

install.packages('TurboNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

methylation - CpG island DNA methylation array data

On BioConductor:TurboNorm-1.61.0(bioc 3.24)TurboNorm-1.60.0(bioc 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

microarray onechannel twochannel preprocessing dnamethylation cpgisland methylationarray normalization

3.30 score 3 scripts 413 downloads 5 exports 12 dependencies

Last updated from:b7715adfcf. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.

Target	Result	Time
bioc-checks	ERROR	160
linux-devel-arm64	NOTE	162
linux-devel-x86_64	NOTE	202
source / vignettes	OK	245
linux-release-arm64	NOTE	161
linux-release-x86_64	NOTE	197
macos-release-arm64	NOTE	125
macos-release-x86_64	NOTE	214
macos-oldrel-arm64	NOTE	142
macos-oldrel-x86_64	NOTE	249
windows-devel	NOTE	503
windows-release	NOTE	444
windows-oldrel	NOTE	500
wasm-release	OK	142

Exports:normalize.AffyBatch.pspline normalize.pspline panel.pspline pspline turbotrend

Dependencies:affy affyio Biobase BiocGenerics BiocManager convert generics lattice limma marray preprocessCore statmod

TurboNorm Overview

Rendered fromturbonorm.Rnwusingutils::Sweave

Last update: 2013-10-26
Started: 2013-10-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A fast scatterplot smoother with applications for microarray normalization	TurboNorm-package
CpG island DNA methylation array data	methylation
Functions for single-colour microarray data normalization using the P-splines	normalize.AffyBatch.pspline normalize.pspline
Panel function for adding a P-spline smoothed curves to a lattice graphics panel	panel.pspline
Function for two-colour microarray data normalization using the P-splines	pspline
turbotrend: a fast scatterplot smoother	turbotrend