Package: TurboNorm 1.55.0
Maarten van Iterson
TurboNorm: A fast scatterplot smoother suitable for microarray normalization
A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.
Authors:
TurboNorm_1.55.0.tar.gz
TurboNorm_1.55.0.zip(r-4.5)TurboNorm_1.55.0.zip(r-4.4)TurboNorm_1.55.0.zip(r-4.3)
TurboNorm_1.55.0.tgz(r-4.4-x86_64)TurboNorm_1.55.0.tgz(r-4.4-arm64)TurboNorm_1.55.0.tgz(r-4.3-x86_64)TurboNorm_1.55.0.tgz(r-4.3-arm64)
TurboNorm_1.55.0.tar.gz(r-4.5-noble)TurboNorm_1.55.0.tar.gz(r-4.4-noble)
TurboNorm_1.55.0.tgz(r-4.4-emscripten)TurboNorm_1.55.0.tgz(r-4.3-emscripten)
TurboNorm.pdf |TurboNorm.html✨
TurboNorm/json (API)
NEWS
| # Install 'TurboNorm' in R: |
| install.packages('TurboNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- methylation - CpG island DNA methylation array data
On BioConductor:TurboNorm-1.55.0(bioc 3.21)TurboNorm-1.54.0(bioc 3.20)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarrayonechanneltwochannelpreprocessingdnamethylationcpgislandmethylationarraynormalization
Last updated 2 months agofrom:0c415666c8. Checks:OK: 1 NOTE: 8. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 30 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 30 2024 |
| R-4.5-linux-x86_64 | NOTE | Nov 30 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 30 2024 |
| R-4.4-mac-x86_64 | NOTE | Nov 30 2024 |
| R-4.4-mac-aarch64 | NOTE | Nov 30 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 30 2024 |
| R-4.3-mac-x86_64 | NOTE | Nov 30 2024 |
| R-4.3-mac-aarch64 | NOTE | Nov 30 2024 |
Exports:normalize.AffyBatch.psplinenormalize.psplinepanel.psplinepsplineturbotrend
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerconvertgenericslatticelimmamarraypreprocessCorestatmodzlibbioc
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A fast scatterplot smoother with applications for microarray normalization | TurboNorm-package |
| CpG island DNA methylation array data | methylation |
| Functions for single-colour microarray data normalization using the P-splines | normalize.AffyBatch.pspline normalize.pspline |
| Panel function for adding a P-spline smoothed curves to a lattice graphics panel | panel.pspline |
| Function for two-colour microarray data normalization using the P-splines | pspline |
| turbotrend: a fast scatterplot smoother | turbotrend |
