1 Introduction | 2 Smoothing using piecewise constant P-splines | 3 Normalization of single- and two-colour data | 4 Normalization of array-based DNA methylation data | 5 Details
Package: TurboNorm 1.61.0
Maarten van Iterson
TurboNorm: A fast scatterplot smoother suitable for microarray normalization
A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.
Authors:
TurboNorm_1.61.0.tar.gz
TurboNorm_1.61.0.zip(r-4.7)TurboNorm_1.61.0.zip(r-4.6)TurboNorm_1.61.0.zip(r-4.5)
TurboNorm_1.61.0.tgz(r-4.6-x86_64)TurboNorm_1.61.0.tgz(r-4.6-arm64)TurboNorm_1.61.0.tgz(r-4.5-x86_64)TurboNorm_1.61.0.tgz(r-4.5-arm64)
TurboNorm_1.61.0.tar.gz(r-4.7-arm64)TurboNorm_1.61.0.tar.gz(r-4.7-x86_64)TurboNorm_1.61.0.tar.gz(r-4.6-arm64)TurboNorm_1.61.0.tar.gz(r-4.6-x86_64)
TurboNorm_1.61.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TurboNorm/json (API)
| # Install 'TurboNorm' in R: |
| install.packages('TurboNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- methylation - CpG island DNA methylation array data
On BioConductor:TurboNorm-1.61.0(bioc 3.24)TurboNorm-1.60.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
microarrayonechanneltwochannelpreprocessingdnamethylationcpgislandmethylationarraynormalization
Last updated from:b7715adfcf. Checks:1 ERROR, 11 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 158 | ||
| linux-devel-arm64 | NOTE | 181 | ||
| linux-devel-x86_64 | NOTE | 189 | ||
| source / vignettes | OK | 204 | ||
| linux-release-arm64 | NOTE | 182 | ||
| linux-release-x86_64 | NOTE | 234 | ||
| macos-release-arm64 | NOTE | 102 | ||
| macos-release-x86_64 | NOTE | 205 | ||
| macos-oldrel-arm64 | NOTE | 102 | ||
| macos-oldrel-x86_64 | NOTE | 271 | ||
| windows-devel | NOTE | 470 | ||
| windows-release | NOTE | 482 | ||
| windows-oldrel | NOTE | 444 | ||
| wasm-release | OK | 120 |
Exports:normalize.AffyBatch.psplinenormalize.psplinepanel.psplinepsplineturbotrend
Dependencies:affyaffyioBiobaseBiocGenericsBiocManagerconvertgenericslatticelimmamarraypreprocessCorestatmod
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| A fast scatterplot smoother with applications for microarray normalization | TurboNorm-package |
| CpG island DNA methylation array data | methylation |
| Functions for single-colour microarray data normalization using the P-splines | normalize.AffyBatch.pspline normalize.pspline |
| Panel function for adding a P-spline smoothed curves to a lattice graphics panel | panel.pspline |
| Function for two-colour microarray data normalization using the P-splines | pspline |
| turbotrend: a fast scatterplot smoother | turbotrend |
