Package: TurboNorm 1.53.0

Maarten van Iterson

TurboNorm: A fast scatterplot smoother suitable for microarray normalization

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Authors:Maarten van Iterson and Chantal van Leeuwen

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TurboNorm.pdf |TurboNorm.html✨
TurboNorm/json (API)
NEWS

# Install 'TurboNorm' in R:

install.packages('TurboNorm', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Datasets:

methylation - CpG island DNA methylation array data

On BioConductor:TurboNorm-1.53.0(bioc 3.20)TurboNorm-1.52.0(bioc 3.19)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

bioconductor-package

5 exports 0.91 score 12 dependencies

Last updated 2 months agofrom:49068df16e

Exports:normalize.AffyBatch.pspline normalize.pspline panel.pspline pspline turbotrend

Dependencies:affy affyio Biobase BiocGenerics BiocManager convert lattice limma marray preprocessCore statmod zlibbioc

TurboNorm Overview

Rendered fromturbonorm.Rnwusingutils::Sweaveon Jul 03 2024.

Last update: 2013-10-26
Started: 2013-10-22

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
A fast scatterplot smoother with applications for microarray normalization	TurboNorm-package
CpG island DNA methylation array data	methylation
Functions for single-colour microarray data normalization using the P-splines	normalize.AffyBatch.pspline normalize.pspline
Panel function for adding a P-spline smoothed curves to a lattice graphics panel	panel.pspline
Function for two-colour microarray data normalization using the P-splines	pspline
turbotrend: a fast scatterplot smoother	turbotrend