{
  "_id": "6ad34e35de48616761a36aba",
  "Package": "TurboNorm",
  "Type": "Package",
  "Title": "A fast scatterplot smoother suitable for microarray\nnormalization",
  "Version": "1.61.0",
  "Date": "2023-15-08",
  "Author": "Maarten van Iterson and Chantal van Leeuwen",
  "Maintainer": "Maarten van Iterson <mviterson@gmail.com>",
  "Description": "A fast scatterplot smoother based on B-splines with\nsecond-order difference penalty. Functions for microarray\nnormalization of single-colour data i.e. Affymetrix/Illumina\nand two-colour data supplied as marray MarrayRaw-objects or\nlimma RGList-objects are available.",
  "License": "LGPL",
  "LazyLoad": "yes",
  "biocViews": "Microarray, OneChannel, TwoChannel, Preprocessing,\nDNAMethylation, CpGIsland, MethylationArray, Normalization",
  "URL": "http://www.humgen.nl/MicroarrayAnalysisGroup.html",
  "Config/pak/sysreqs": "zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:03 UTC",
  "RemoteUrl": "https://github.com/bioc/TurboNorm",
  "RemoteRef": "HEAD",
  "RemoteSha": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-10-17 10:20:54 UTC",
    "User": "root"
  },
  "_user": "bioc",
  "_type": "src",
  "_file": "TurboNorm_1.61.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/48c96e477e3eb1aea8aec1e2adcc7222e3c36996c3975a0335363022f78dc7ee",
  "_filesize": 2233689,
  "_sha256": "48c96e477e3eb1aea8aec1e2adcc7222e3c36996c3975a0335363022f78dc7ee",
  "_expires": "2027-01-25T10:30:10.000Z",
  "_created": "2026-10-17T10:20:54.000Z",
  "_published": "2026-10-17T10:30:13.555Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 1,
    "warning": 4,
    "note": 10
  },
  "_upstream": "https://github.com/bioc/TurboNorm",
  "_commit": {
    "id": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379703
  },
  "_maintainer": {
    "name": "Maarten van Iterson",
    "email": "mviterson@gmail.com",
    "login": "mvaniterson",
    "description": "",
    "uuid": 10561514
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 117372919846,
      "time": 128,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "12098445703"
    },
    {
      "job": 117372919798,
      "time": 153,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12098221673"
    },
    {
      "job": 117372919855,
      "time": 240,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12098111377"
    },
    {
      "job": 117372919844,
      "time": 161,
      "config": "linux-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12097589956"
    },
    {
      "job": 117372919803,
      "time": 258,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12098240913"
    },
    {
      "job": 117372919878,
      "time": 129,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12098276763"
    },
    {
      "job": 117372919869,
      "time": 374,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12098361801"
    },
    {
      "job": 117372919838,
      "time": 145,
      "config": "macos-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12097199568"
    },
    {
      "job": 117372919804,
      "time": 218,
      "config": "macos-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12098490800"
    },
    {
      "job": 117372218128,
      "time": 228,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "12097843044"
    },
    {
      "job": 117372919769,
      "time": 107,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "12096974781"
    },
    {
      "job": 117372919887,
      "time": 265,
      "config": "windows-devel-arm64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12098261789"
    },
    {
      "job": 117372919873,
      "time": 490,
      "config": "windows-devel-x86_64",
      "r": "4.7.0",
      "check": "NOTE",
      "artifact": "12097893555"
    },
    {
      "job": 117372919862,
      "time": 478,
      "config": "windows-oldrel-x86_64",
      "r": "4.5.3",
      "check": "NOTE",
      "artifact": "12098670524"
    },
    {
      "job": 117372919854,
      "time": 214,
      "config": "windows-release-arm64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12098405444"
    },
    {
      "job": 117372919815,
      "time": 445,
      "config": "windows-release-x86_64",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "12097893468"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 2.12.0",
      "role": "Depends"
    },
    {
      "package": "convert",
      "role": "Depends"
    },
    {
      "package": "limma",
      "version": ">= 1.7.0",
      "role": "Depends"
    },
    {
      "package": "marray",
      "role": "Depends"
    },
    {
      "package": "stats",
      "role": "Imports"
    },
    {
      "package": "grDevices",
      "role": "Imports"
    },
    {
      "package": "affy",
      "role": "Imports"
    },
    {
      "package": "lattice",
      "role": "Imports"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "affydata",
      "role": "Suggests"
    },
    {
      "package": "hgu95av2cdf",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.61.0",
      "bioc": "3.24",
      "repository": "bioc"
    },
    {
      "branch": "release",
      "version": "1.60.0",
      "bioc": "3.23",
      "repository": "bioc"
    }
  ],
  "_topics": [
    "microarray",
    "onechannel",
    "twochannel",
    "preprocessing",
    "dnamethylation",
    "cpgisland",
    "methylationarray",
    "normalization"
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 477,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_downloads": {
    "count": 672,
    "source": "https://www.bioconductor.org/packages/stats/bioc/TurboNorm"
  },
  "_searchresults": 3,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/TurboNorm.html"
  ],
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "normalize.AffyBatch.pspline",
    "normalize.pspline",
    "panel.pspline",
    "pspline",
    "turbotrend"
  ],
  "_datasets": [
    {
      "name": "methylation",
      "title": "CpG island DNA methylation array data",
      "object": "methylation",
      "file": "methylation.RData",
      "class": [
        "RGList"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    }
  ],
  "_help": [
    {
      "page": "turbonorm-package",
      "title": "A fast scatterplot smoother with applications for microarray normalization",
      "topics": [
        "TurboNorm-package"
      ]
    },
    {
      "page": "methylation",
      "title": "CpG island DNA methylation array data",
      "topics": [
        "methylation"
      ]
    },
    {
      "page": "normalize.pspline",
      "title": "Functions for single-colour microarray data normalization using the P-splines",
      "topics": [
        "normalize.AffyBatch.pspline",
        "normalize.pspline"
      ]
    },
    {
      "page": "panel.pspline",
      "title": "Panel function for adding a P-spline smoothed curves to a lattice graphics panel",
      "topics": [
        "panel.pspline"
      ]
    },
    {
      "page": "pspline",
      "title": "Function for two-colour microarray data normalization using the P-splines",
      "topics": [
        "pspline"
      ]
    },
    {
      "page": "turbotrend",
      "title": "turbotrend: a fast scatterplot smoother",
      "topics": [
        "turbotrend"
      ]
    }
  ],
  "_rundeps": [
    "affy",
    "affyio",
    "Biobase",
    "BiocGenerics",
    "BiocManager",
    "convert",
    "generics",
    "lattice",
    "limma",
    "marray",
    "preprocessCore",
    "statmod"
  ],
  "_vignettes": [
    {
      "source": "turbonorm.Rnw",
      "filename": "turbonorm.pdf",
      "title": "TurboNorm Overview",
      "engine": "utils::Sweave",
      "headings": [
        "1 Introduction",
        "2 Smoothing using piecewise constant P-splines",
        "3 Normalization of single- and two-colour data",
        "4 Normalization of array-based DNA methylation data",
        "5 Details"
      ],
      "created": "2013-10-22 10:49:47",
      "modified": "2013-10-26 21:23:48",
      "commits": 4
    }
  ],
  "_score": 3.3010299956639813,
  "_indexed": true,
  "_nocasepkg": "turbonorm",
  "_universes": [
    "bioc",
    "mvaniterson"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-10-17T10:23:13.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/e48e98a879c0be40fe3374f121463e2a4a48a71ac8c4710792a2caf273e7b5c5",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-10-17T10:24:25.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/dd9b440bb383b14b4298e2e533f57031a5538464f37337cbbc467df163c2818f",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-10-17T10:23:20.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/42d8286a89ee972201b34d74fbf0ce4c68d49d0dc170120bcde917cb8a26b22e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.61.0",
      "date": "2026-10-17T10:25:03.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/036a488a68dec674a5c5f7ccff7dfd4ccc6623760f246d8226d081310fa8236c",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-10-17T10:25:01.000Z",
      "arch": "aarch64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/2dea4e713e0cdb79e69dfd2a758cb821ada1278f6611532f8cb13d5b6dc52199",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-10-17T10:27:30.000Z",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/5b66693211cf93c0aa70d69c1dcfdbae00c17a3fe50761fbcc801940fcaf15b8",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-10-17T10:25:18.000Z",
      "arch": "aarch64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/5102052037e311dbc722809fa2ef14a350be71b586efdeba61ae8a3ce0b36b2e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.1",
      "os": "mac",
      "version": "1.61.0",
      "date": "2026-10-17T10:25:46.000Z",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/2d9e6a90c0dc537cf7ae3bb1378a8c011b7608349bd27b6cc5b76efd114f3ae4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.61.0",
      "date": "2026-10-17T10:23:01.000Z",
      "arch": "emscripten",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/dbdb0011f7bce92d907bdd40fc3e213306904eb9af3595f72506cf50cf439c15",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-17T10:24:44.000Z",
      "arch": "aarch64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/54f57d965830d7028bc1414b17da36c9ec4b2bea2b46a206054a5e9e41acfd38",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.7.0",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-17T10:27:46.000Z",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/645a29e0b1ea0d1fc0d860d185164aa89eb96bf82544e064de88cdf6415b9b7e",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.5.3",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-17T10:28:17.000Z",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/92c55d1546b219bc7b50aebba47bc8335061df29af7e60665a34010ff54a5ba4",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-17T10:24:05.000Z",
      "arch": "aarch64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/7974e9b7bbca8bd6bd8d21de2f3650dec2a7b68e308bac1ca2ca60016c360aef",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    },
    {
      "r": "4.6.1",
      "os": "win",
      "version": "1.61.0",
      "date": "2026-10-17T10:27:36.000Z",
      "arch": "x86_64",
      "commit": "b7715adfcfd53aae1dbd5c453075c12dd74f0109",
      "fileid": "https://r2.ropensci.org/52fa14c1ff22dc6a8bf3f0f020bb1c594f706c6b830d35e01978a76a273f1c61",
      "status": "success",
      "check": "NOTE",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/39024292527"
    }
  ]
}