Package: TileDBArray 1.15.0

Aaron Lun

TileDBArray: Using TileDB as a DelayedArray Backend

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Authors:Aaron Lun [aut, cre], Genentech, Inc. [cph]

TileDBArray_1.15.0.tar.gz
TileDBArray_1.15.0.zip(r-4.5)TileDBArray_1.15.0.zip(r-4.4)TileDBArray_1.15.0.zip(r-4.3)
TileDBArray_1.15.0.tgz(r-4.4-arm64)TileDBArray_1.15.0.tgz(r-4.4-x86_64)TileDBArray_1.15.0.tgz(r-4.3-arm64)TileDBArray_1.15.0.tgz(r-4.3-x86_64)
TileDBArray_1.15.0.tar.gz(r-4.5-noble)TileDBArray_1.15.0.tar.gz(r-4.4-noble)
TileDBArray_1.15.0.tgz(r-4.4-emscripten)TileDBArray_1.15.0.tgz(r-4.3-emscripten)
TileDBArray.pdf |TileDBArray.html✨
TileDBArray/json (API)

# Install 'TileDBArray' in R:

install.packages('TileDBArray', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/ltla/tiledbarray/issues

Uses libs:

c++– GNU Standard C++ Library v3

On BioConductor:TileDBArray-1.15.0(bioc 3.20)TileDBArray-1.14.0(bioc 3.19)

bioconductor-package

28 exports 0.71 score 26 dependencies

Last updated 2 months agofrom:81f0708641

Exports:chunkdim DelayedArray extract_array getTileDBAttr getTileDBCapacity getTileDBCellOrder getTileDBContext getTileDBExtent getTileDBPath getTileDBTileOrder is_sparse matrixClass OLD_extract_sparse_array path setTileDBAttr setTileDBCapacity setTileDBCellOrder setTileDBContext setTileDBExtent setTileDBPath setTileDBTileOrder show TileDBArray TileDBArraySeed TileDBRealizationSink type write_block writeTileDBArray

Dependencies:abind BiocGenerics bit bit64 crayon DelayedArray IRanges lattice Matrix MatrixGenerics matrixStats nanoarrow nanotime Rcpp RcppCCTZ RcppDate RcppInt64 RcppSpdlog S4Arrays S4Vectors SparseArray spdl tiledb XVector zlibbioc zoo

A DelayedArray backend for TileDB

Aaron Lun

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Jun 30 2024.

Last update: 2020-06-12
Started: 2020-05-14

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Delayed TileDB arrays	chunkdim,TileDBArraySeed-method DelayedArray,TileDBArraySeed-method extract_array,TileDBArraySeed-method is_sparse,TileDBArraySeed-method matrixClass,TileDBArray-method OLD_extract_sparse_array,TileDBArraySeed-method path,TileDBArraySeed-method show,TileDBArraySeed-method TileDBArray TileDBArray-class TileDBArraySeed TileDBArraySeed-class TileDBMatrix TileDBMatrix-class type,TileDBArraySeed-method
TileDBArray global options	getTileDBAttr getTileDBCapacity getTileDBCellOrder getTileDBContext getTileDBExtent getTileDBPath getTileDBTileOrder setTileDBAttr setTileDBCapacity setTileDBCellOrder setTileDBContext setTileDBExtent setTileDBPath setTileDBTileOrder TileDBArray-globals
The 'TileDBArray' package	TileDBArray-pkg
Write arrays to TileDB	coerce,ANY,TileDBArray-method coerce,ANY,TileDBMatrix-method coerce,ANY,TileDBRealizationSink-method coerce,TileDBRealizationSink,DelayedArray-method coerce,TileDBRealizationSink,TileDBArray-method coerce,TileDBRealizationSink,TileDBMatrix-method TileDBRealizationSink TileDBRealizationSink-class type,TileDBRealizationSink-method writeTileDBArray write_block,TileDBRealizationSink-method