Package: TileDBArray 1.17.0
Aaron Lun
TileDBArray: Using TileDB as a DelayedArray Backend
Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.
Authors:
TileDBArray_1.17.0.tar.gz
TileDBArray_1.17.0.zip(r-4.5)TileDBArray_1.17.0.zip(r-4.4)TileDBArray_1.17.0.zip(r-4.3)
TileDBArray_1.17.0.tgz(r-4.4-any)TileDBArray_1.17.0.tgz(r-4.3-any)
TileDBArray_1.17.0.tar.gz(r-4.5-noble)TileDBArray_1.17.0.tar.gz(r-4.4-noble)
TileDBArray_1.17.0.tgz(r-4.4-emscripten)TileDBArray_1.17.0.tgz(r-4.3-emscripten)
TileDBArray.pdf |TileDBArray.html✨
TileDBArray/json (API)
NEWS
| # Install 'TileDBArray' in R: |
| install.packages('TileDBArray', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/ltla/tiledbarray/issues
On BioConductor:TileDBArray-1.17.0(bioc 3.21)TileDBArray-1.16.0(bioc 3.20)
datarepresentationinfrastructuresoftware
Last updated 23 days agofrom:277ceda5bd. Checks:OK: 1 NOTE: 1 ERROR: 2 WARNING: 3. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 31 2024 |
| R-4.5-win | WARNING | Oct 31 2024 |
| R-4.5-linux | NOTE | Oct 31 2024 |
| R-4.4-win | WARNING | Oct 31 2024 |
| R-4.4-mac | ERROR | Oct 31 2024 |
| R-4.3-win | WARNING | Oct 31 2024 |
| R-4.3-mac | ERROR | Oct 31 2024 |
Exports:chunkdimDelayedArrayextract_arrayextract_sparse_arraygetTileDBAttrgetTileDBCapacitygetTileDBCellOrdergetTileDBContextgetTileDBDimTypegetTileDBExtentgetTileDBPathgetTileDBTileOrderis_sparsematrixClasspathsetTileDBAttrsetTileDBCapacitysetTileDBCellOrdersetTileDBContextsetTileDBDimTypesetTileDBExtentsetTileDBPathsetTileDBTileOrdershowTileDBArrayTileDBArraySeedTileDBRealizationSinktypewrite_blockwriteTileDBArray
Dependencies:abindBiocGenericsbitbit64crayonDelayedArraygenericsIRangeslatticeMatrixMatrixGenericsmatrixStatsnanoarrownanotimeRcppRcppCCTZRcppDateRcppInt64RcppSpdlogS4ArraysS4VectorsSparseArrayspdltiledbXVectorzlibbioczoo
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Delayed TileDB arrays | chunkdim,TileDBArraySeed-method DelayedArray,TileDBArraySeed-method extract_array,TileDBArraySeed-method extract_sparse_array,TileDBArraySeed-method is_sparse,TileDBArraySeed-method matrixClass,TileDBArray-method path,TileDBArraySeed-method show,TileDBArraySeed-method TileDBArray TileDBArray-class TileDBArraySeed TileDBArraySeed-class TileDBMatrix TileDBMatrix-class type,TileDBArraySeed-method |
| TileDBArray global options | getTileDBAttr getTileDBCapacity getTileDBCellOrder getTileDBContext getTileDBDimType getTileDBExtent getTileDBPath getTileDBTileOrder setTileDBAttr setTileDBCapacity setTileDBCellOrder setTileDBContext setTileDBDimType setTileDBExtent setTileDBPath setTileDBTileOrder TileDBArray-globals |
| The 'TileDBArray' package | TileDBArray-pkg |
| Write arrays to TileDB | coerce,ANY,TileDBArray-method coerce,ANY,TileDBMatrix-method coerce,ANY,TileDBRealizationSink-method coerce,TileDBRealizationSink,DelayedArray-method coerce,TileDBRealizationSink,TileDBArray-method coerce,TileDBRealizationSink,TileDBMatrix-method TileDBRealizationSink TileDBRealizationSink-class type,TileDBRealizationSink-method writeTileDBArray write_block,TileDBRealizationSink-method |
