Package: TileDBArray 1.17.0

Aaron Lun

TileDBArray: Using TileDB as a DelayedArray Backend

Implements a DelayedArray backend for reading and writing dense or sparse arrays in the TileDB format. The resulting TileDBArrays are compatible with all Bioconductor pipelines that can accept DelayedArray instances.

Authors:Aaron Lun [aut, cre], Genentech, Inc. [cph]

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TileDBArray.pdf |TileDBArray.html
TileDBArray/json (API)
NEWS

# Install 'TileDBArray' in R:
install.packages('TileDBArray', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/ltla/tiledbarray/issues

On BioConductor:TileDBArray-1.17.0(bioc 3.21)TileDBArray-1.16.0(bioc 3.20)

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6.41 score 10 stars 26 scripts 148 downloads 30 exports 27 dependencies

Last updated 2 months agofrom:277ceda5bd. Checks:OK: 5 NOTE: 2. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 27 2024
R-4.5-winNOTENov 27 2024
R-4.5-linuxNOTENov 27 2024
R-4.4-winOKNov 27 2024
R-4.4-macOKNov 27 2024
R-4.3-winOKNov 27 2024
R-4.3-macOKNov 27 2024

Exports:chunkdimDelayedArrayextract_arrayextract_sparse_arraygetTileDBAttrgetTileDBCapacitygetTileDBCellOrdergetTileDBContextgetTileDBDimTypegetTileDBExtentgetTileDBPathgetTileDBTileOrderis_sparsematrixClasspathsetTileDBAttrsetTileDBCapacitysetTileDBCellOrdersetTileDBContextsetTileDBDimTypesetTileDBExtentsetTileDBPathsetTileDBTileOrdershowTileDBArrayTileDBArraySeedTileDBRealizationSinktypewrite_blockwriteTileDBArray

Dependencies:abindBiocGenericsbitbit64crayonDelayedArraygenericsIRangeslatticeMatrixMatrixGenericsmatrixStatsnanoarrownanotimeRcppRcppCCTZRcppDateRcppInt64RcppSpdlogS4ArraysS4VectorsSparseArrayspdltiledbXVectorzlibbioczoo

A DelayedArray backend for TileDB

Rendered fromuserguide.Rmdusingknitr::rmarkdownon Nov 27 2024.

Last update: 2020-06-12
Started: 2020-05-14

Readme and manuals

Help Manual

Help pageTopics
Delayed TileDB arrayschunkdim,TileDBArraySeed-method DelayedArray,TileDBArraySeed-method extract_array,TileDBArraySeed-method extract_sparse_array,TileDBArraySeed-method is_sparse,TileDBArraySeed-method matrixClass,TileDBArray-method path,TileDBArraySeed-method show,TileDBArraySeed-method TileDBArray TileDBArray-class TileDBArraySeed TileDBArraySeed-class TileDBMatrix TileDBMatrix-class type,TileDBArraySeed-method
TileDBArray global optionsgetTileDBAttr getTileDBCapacity getTileDBCellOrder getTileDBContext getTileDBDimType getTileDBExtent getTileDBPath getTileDBTileOrder setTileDBAttr setTileDBCapacity setTileDBCellOrder setTileDBContext setTileDBDimType setTileDBExtent setTileDBPath setTileDBTileOrder TileDBArray-globals
The 'TileDBArray' packageTileDBArray-pkg
Write arrays to TileDBcoerce,ANY,TileDBArray-method coerce,ANY,TileDBMatrix-method coerce,ANY,TileDBRealizationSink-method coerce,TileDBRealizationSink,DelayedArray-method coerce,TileDBRealizationSink,TileDBArray-method coerce,TileDBRealizationSink,TileDBMatrix-method TileDBRealizationSink TileDBRealizationSink-class type,TileDBRealizationSink-method writeTileDBArray write_block,TileDBRealizationSink-method