{ "_id": "6a1aef931d7bb097a09f63ff", "Package": "TileDBArray", "Version": "1.23.0", "Date": "2026-04-10", "Title": "Using TileDB as a DelayedArray Backend", "Description": "Implements a DelayedArray backend for reading and writing\ndense or sparse arrays in the TileDB format. The resulting\nTileDBArrays are compatible with all Bioconductor pipelines\nthat can accept DelayedArray instances.", "Authors@R": "c(\nperson(\"Aaron\", \"Lun\", role=c(\"aut\", \"cre\"), email=\"infinite.monkeys.with.keyboards@gmail.com\"),\nperson(\"Genentech, Inc.\", role=\"cph\")\n)", "License": "MIT + file LICENSE", "biocViews": "DataRepresentation, Infrastructure, Software", "VignetteBuilder": "knitr", "BugReports": "https://github.com/LTLA/TileDBArray", "URL": "https://github.com/LTLA/TileDBArray", "RoxygenNote": "7.3.2", "Encoding": "UTF-8", "Config/pak/sysreqs": "cmake git libzstd-dev zlib1g-dev", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:53:43 UTC", "RemoteUrl": "https://github.com/bioc/TileDBArray", "RemoteRef": "HEAD", "RemoteSha": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "NeedsCompilation": "no", "Packaged": { "Date": "2026-05-30 09:42:26 UTC", "User": "root" }, "Author": "Aaron Lun [aut, cre],\nGenentech, Inc. [cph]", "Maintainer": "Aaron Lun ", "MD5sum": "f61daf5f3412bddfaf5d5a3487b3dcbf", "_user": "bioc", "_type": "src", "_file": "TileDBArray_1.23.0.tar.gz", "_fileid": "86c86080370e2de0faf2a8278b8929c9d9795581bf7b6ccfca00499a9baa039a", "_filesize": 121643, "_sha256": "86c86080370e2de0faf2a8278b8929c9d9795581bf7b6ccfca00499a9baa039a", "_created": "2026-05-30T09:42:26.000Z", "_published": "2026-05-30T14:09:23.298Z", "_jobs": [ { "job": 78640391866, "time": 173, "config": "bioc-checks", "r": "4.6.0", "check": "WARNING", "artifact": "7307415590" }, { "job": 78640391872, "time": 270, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "7307424260" }, { "job": 78640391876, "time": 253, "config": "linux-release-x86_64", "r": "4.6.0", "check": "NOTE", "artifact": "7307422863" }, { "job": 78640391881, "time": 185, "config": "macos-oldrel-arm64", "r": "4.5.3", "check": "NOTE", "artifact": "7308755423" }, { "job": 78640391874, "time": 140, "config": "macos-release-arm64", "r": "4.6.0", "check": "NOTE", "artifact": "7308750438" }, { "job": 78639726871, "time": 241, "config": "source", "r": "4.6.0", "check": "OK", "artifact": "7307262644" }, { "job": 78640391863, "time": 131, "config": "wasm-release", "r": "4.6.0", "check": "OK", "artifact": "7307411750" }, { "job": 78640391879, "time": 200, "config": "windows-devel", "r": "4.7.0", "check": "NOTE", "artifact": "7307415925" }, { "job": 78640391888, "time": 203, "config": "windows-oldrel", "r": "4.5.3", "check": "NOTE", "artifact": "7307416273" }, { "job": 78640391883, "time": 191, "config": "windows-release", "r": "4.6.0", "check": "NOTE", "artifact": "7307415810" } ], "_bioccheck": { "error": 0, "warning": 1, "note": 6 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114", "_status": "success", "_host": "GitHub-Actions", "_upstream": "https://github.com/bioc/TileDBArray", "_commit": { "id": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "author": "A Wokaty ", "committer": "A Wokaty ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777380823 }, "_maintainer": { "name": "Aaron Lun", "email": "infinite.monkeys.with.keyboards@gmail.com", "login": "ltla", "twitter": "@realAaronLun", "description": "(ノಠ益ಠ)ノ彡┻━┻\n", "uuid": 8166669 }, "_distro": "noble", "_registered": true, "_dependencies": [ { "package": "SparseArray", "version": ">= 1.5.20", "role": "Depends" }, { "package": "DelayedArray", "version": ">= 0.31.7", "role": "Depends" }, { "package": "methods", "role": "Imports" }, { "package": "tiledb", "role": "Imports" }, { "package": "S4Vectors", "role": "Imports" }, { "package": "knitr", "role": "Suggests" }, { "package": "Matrix", "role": "Suggests" }, { "package": "rmarkdown", "role": "Suggests" }, { "package": "BiocStyle", "role": "Suggests" }, { "package": "BiocParallel", "role": "Suggests" }, { "package": "testthat", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 1, "_updates": [ { "week": "2025-25", "n": 1 }, { "week": "2025-44", "n": 2 }, { "week": "2026-14", "n": 1 }, { "week": "2026-15", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.23.0", "bioc": "3.24" }, { "branch": "release", "version": "1.22.0", "bioc": "3.23" } ], "_topics": [ "datarepresentation", "infrastructure", "software" ], "_stars": 11, "_contributors": [ { "user": "ltla", "count": 42, "uuid": 8166669 }, { "user": "eddelbuettel", "count": 15, "uuid": 673121 }, { "user": "jwokaty", "count": 14, "uuid": 1744257 }, { "user": "nturaga", "count": 8, "uuid": 2746443 }, { "user": "hpages", "count": 6, "uuid": 8810451 } ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_downloads": { "count": 359, "source": "https://www.bioconductor.org/packages/stats/bioc/TileDBArray" }, "_devurl": "https://github.com/ltla/tiledbarray", "_searchresults": 26, "_rbuild": "4.6.0", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/NEWS.html", "extra/NEWS.txt", "extra/readme.html", "extra/readme.md", "extra/TileDBArray.html", "manual.pdf" ], "_homeurl": "https://github.com/ltla/tiledbarray", "_realowner": "bioc", "_cranurl": false, "_exports": [ "chunkdim", "DelayedArray", "extract_array", "extract_sparse_array", "getTileDBAttr", "getTileDBCapacity", "getTileDBCellOrder", "getTileDBContext", "getTileDBDimType", "getTileDBExtent", "getTileDBPath", "getTileDBTileOrder", "is_sparse", "matrixClass", "path", "setTileDBAttr", "setTileDBCapacity", "setTileDBCellOrder", "setTileDBContext", "setTileDBDimType", "setTileDBExtent", "setTileDBPath", "setTileDBTileOrder", "show", "TileDBArray", "TileDBArraySeed", "TileDBRealizationSink", "type", "write_block", "writeTileDBArray" ], "_help": [ { "page": "TileDBArray", "title": "Delayed TileDB arrays", "topics": [ "chunkdim,TileDBArraySeed-method", "DelayedArray,TileDBArraySeed-method", "extract_array,TileDBArraySeed-method", "extract_sparse_array,TileDBArraySeed-method", "is_sparse,TileDBArraySeed-method", "matrixClass,TileDBArray-method", "path,TileDBArraySeed-method", "show,TileDBArraySeed-method", "TileDBArray", "TileDBArray-class", "TileDBArraySeed", "TileDBArraySeed-class", "TileDBMatrix", "TileDBMatrix-class", "type,TileDBArraySeed-method" ] }, { "page": "TileDBArray-globals", "title": "TileDBArray global options", "topics": [ "getTileDBAttr", "getTileDBCapacity", "getTileDBCellOrder", "getTileDBContext", "getTileDBDimType", "getTileDBExtent", "getTileDBPath", "getTileDBTileOrder", "setTileDBAttr", "setTileDBCapacity", "setTileDBCellOrder", "setTileDBContext", "setTileDBDimType", "setTileDBExtent", "setTileDBPath", "setTileDBTileOrder", "TileDBArray-globals" ] }, { "page": "TileDBArray-pkg", "title": "The 'TileDBArray' package", "topics": [ "TileDBArray-pkg" ] }, { "page": "TileDBRealizationSink", "title": "Write arrays to TileDB", "topics": [ "coerce,ANY,TileDBArray-method", "coerce,ANY,TileDBMatrix-method", "coerce,ANY,TileDBRealizationSink-method", "coerce,TileDBRealizationSink,DelayedArray-method", "coerce,TileDBRealizationSink,TileDBArray-method", "coerce,TileDBRealizationSink,TileDBMatrix-method", "TileDBRealizationSink", "TileDBRealizationSink-class", "type,TileDBRealizationSink-method", "writeTileDBArray", "write_block,TileDBRealizationSink-method" ] } ], "_readme": "https://github.com/bioc/TileDBArray/raw/HEAD/README.md", "_rundeps": [ "abind", "BiocGenerics", "bit", "bit64", "DelayedArray", "generics", "IRanges", "lattice", "Matrix", "MatrixGenerics", "matrixStats", "nanoarrow", "nanotime", "Rcpp", "RcppCCTZ", "RcppDate", "RcppInt64", "RcppSpdlog", "S4Arrays", "S4Vectors", "SparseArray", "spdl", "tiledb", "XVector", "zoo" ], "_vignettes": [ { "source": "userguide.Rmd", "filename": "userguide.html", "title": "A DelayedArray backend for TileDB", "author": "Aaron Lun", "engine": "knitr::rmarkdown", "headings": [ "Introduction", "Creating a TileDBArray", "Manipulating TileDBArrays", "Controlling backend creation", "Session information" ], "created": "2020-05-14 23:35:57", "modified": "2020-06-12 19:18:59", "commits": 3 } ], "_score": 6.933487287848705, "_indexed": true, "_nocasepkg": "tiledbarray", "_universes": [ "bioc", "ltla" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.23.0", "date": "2026-05-30T10:09:26.000Z", "distro": "noble", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "8ac42edafa99b69c09584a5f863605734763dfc2e2755a5c9efd879936e33fb2", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.6.0", "os": "linux", "version": "1.23.0", "date": "2026-05-30T10:09:22.000Z", "distro": "noble", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "8e5e47c92a700e22a370f191c27cb21a68da1fe103a5d51e0f63dbacb31ad8fc", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.5.3", "os": "mac", "version": "1.23.0", "date": "2026-05-30T14:07:38.000Z", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "b365ea7a5430482718ba6f1d29f752f95a8b5d51e4c0d8f7f993330f567e8145", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.6.0", "os": "mac", "version": "1.23.0", "date": "2026-05-30T14:07:10.000Z", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "0b57712fc088bf3f692eb15eaf87dddd591e68998590681f013c19c809ca59ed", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.6.0", "os": "wasm", "version": "1.23.0", "date": "2026-05-30T10:08:57.000Z", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "035f0e627dd9022e85d1f7e8e4b8288091e791568ec0bfe6e870512ed6a9c469", "status": "success", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.7.0", "os": "win", "version": "1.23.0", "date": "2026-05-30T10:07:47.000Z", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "21a27f90dc442508d577ccd759c70a1c3c10e21e978fc111f0e7ceb0776aae60", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.5.3", "os": "win", "version": "1.23.0", "date": "2026-05-30T10:07:48.000Z", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "331108c1848bef67f85f22232c75372d2e261a41119791c2312780fb3276aa05", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" }, { "r": "4.6.0", "os": "win", "version": "1.23.0", "date": "2026-05-30T10:07:44.000Z", "commit": "2d0c3223a3a69365487ae2ac971b3d48ac0c8091", "fileid": "ce2f0036d9cbf17941e97009df1e60c7be75789214358bdac6d95ff2c4ae58b9", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/26676568114" } ] }