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  "Title": "Using TileDB as a DelayedArray Backend",
  "Description": "Implements a DelayedArray backend for reading and writing\ndense or sparse arrays in the TileDB format. The resulting\nTileDBArrays are compatible with all Bioconductor pipelines\nthat can accept DelayedArray instances.",
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    "getTileDBCellOrder",
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    "getTileDBExtent",
    "getTileDBPath",
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    "path",
    "setTileDBAttr",
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    "setTileDBCellOrder",
    "setTileDBContext",
    "setTileDBDimType",
    "setTileDBExtent",
    "setTileDBPath",
    "setTileDBTileOrder",
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    "type",
    "write_block",
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    {
      "page": "TileDBArray",
      "title": "Delayed TileDB arrays",
      "topics": [
        "chunkdim,TileDBArraySeed-method",
        "DelayedArray,TileDBArraySeed-method",
        "extract_array,TileDBArraySeed-method",
        "extract_sparse_array,TileDBArraySeed-method",
        "is_sparse,TileDBArraySeed-method",
        "matrixClass,TileDBArray-method",
        "path,TileDBArraySeed-method",
        "show,TileDBArraySeed-method",
        "TileDBArray",
        "TileDBArray-class",
        "TileDBArraySeed",
        "TileDBArraySeed-class",
        "TileDBMatrix",
        "TileDBMatrix-class",
        "type,TileDBArraySeed-method"
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    },
    {
      "page": "TileDBArray-globals",
      "title": "TileDBArray global options",
      "topics": [
        "getTileDBAttr",
        "getTileDBCapacity",
        "getTileDBCellOrder",
        "getTileDBContext",
        "getTileDBDimType",
        "getTileDBExtent",
        "getTileDBPath",
        "getTileDBTileOrder",
        "setTileDBAttr",
        "setTileDBCapacity",
        "setTileDBCellOrder",
        "setTileDBContext",
        "setTileDBDimType",
        "setTileDBExtent",
        "setTileDBPath",
        "setTileDBTileOrder",
        "TileDBArray-globals"
      ]
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      "page": "TileDBArray-pkg",
      "title": "The 'TileDBArray' package",
      "topics": [
        "TileDBArray-pkg"
      ]
    },
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      "topics": [
        "coerce,ANY,TileDBArray-method",
        "coerce,ANY,TileDBMatrix-method",
        "coerce,ANY,TileDBRealizationSink-method",
        "coerce,TileDBRealizationSink,DelayedArray-method",
        "coerce,TileDBRealizationSink,TileDBArray-method",
        "coerce,TileDBRealizationSink,TileDBMatrix-method",
        "TileDBRealizationSink",
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