MicroRNA perturbation datasets | TargetScan context score and PCT | TargetScore | Session Info
Package: TargetScoreData 1.49.0
Yue Li
TargetScoreData: TargetScoreData
Precompiled and processed miRNA-overexpression fold-changes from 84 Gene Expression Omnibus (GEO) series corresponding to 6 platforms, 77 human cells or tissues, and 113 distinct miRNAs. Accompanied with the data, we also included in this package the sequence feature scores from TargetScanHuman 6.1 including the context+ score and the probabilities of conserved targeting for each miRNA-mRNA interaction. Thus, the user can use these static sequence-based scores together with user-supplied tissue/cell-specific fold-change due to miRNA overexpression to predict miRNA targets using the package TargetScore (download separately)
Authors:
TargetScoreData_1.49.0.tar.gz
TargetScoreData_1.49.0.tar.gz(r-4.7-any)TargetScoreData_1.49.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
TargetScoreData/json (API)
| # Install 'TargetScoreData' in R: |
| install.packages('TargetScoreData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:TargetScoreData-1.49.0(data/experiment 3.24)TargetScoreData-1.48.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatarnaseqdatamirnadatadatapkg
Last updated from:ea3fb42b97. Checks:1 ERROR, 2 NOTE, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 127 | ||
| linux-devel | NOTE | 167 | ||
| source / vignettes | OK | 212 | ||
| linux-release | NOTE | 191 |
Exports:get_miRNA_family_infoget_miRNA_transfection_dataget_precomputed_logFCget_precomputed_targetScoresget_TargetScanHuman_contextScoreget_TargetScanHuman_PCTget_validated_targets
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Processed human microRNA perturbation data from GEO, and sequence information from TargetScan, and targetScore from TargetScore | TargetScoreData-package TargetScoreData |
| MicroRNA family information | get_miRNA_family_info |
| get_miRNA_transfection_data | get_miRNA_transfection_data |
| get_precomputed_logFC | get_precomputed_logFC |
| get_precomputed_targetScores | get_precomputed_targetScores |
| get_TargetScanHuman_contextScore | get_TargetScanHuman_contextScore |
| get_TargetScanHuman_PCT | get_TargetScanHuman_PCT |
| get_validated_targets | get_validated_targets |