{ "_id": "6aca1570fe5cc25786e847b5", "Package": "TargetScoreData", "Title": "TargetScoreData", "Version": "1.49.0", "Author": "Yue Li", "Maintainer": "Yue Li ", "Description": "Precompiled and processed miRNA-overexpression\nfold-changes from 84 Gene Expression Omnibus (GEO) series\ncorresponding to 6 platforms, 77 human cells or tissues, and\n113 distinct miRNAs. Accompanied with the data, we also\nincluded in this package the sequence feature scores from\nTargetScanHuman 6.1 including the context+ score and the\nprobabilities of conserved targeting for each miRNA-mRNA\ninteraction. Thus, the user can use these static sequence-based\nscores together with user-supplied tissue/cell-specific\nfold-change due to miRNA overexpression to predict miRNA\ntargets using the package TargetScore (download separately)", "biocViews": "ExperimentData, RNASeqData, miRNAData", "License": "GPL-2", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-04-28 12:26:01 UTC", "RemoteUrl": "https://github.com/bioc/TargetScoreData", "RemoteRef": "HEAD", "RemoteSha": "ea3fb42b973cee7bfb70d14f8020a7b30a22bebf", "NeedsCompilation": "no", "Packaged": { "Date": "2026-10-10 10:32:18 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "TargetScoreData_1.49.0.tar.gz", "_fileid": "https://r2.ropensci.org/b5475ec061b09c6c421b877934482ce95f50603125c00e558f48cb210546b2a9", "_filesize": 216288601, "_sha256": "b5475ec061b09c6c421b877934482ce95f50603125c00e558f48cb210546b2a9", "_expires": "2027-01-18T10:37:28.000Z", "_created": "2026-10-10T10:32:18.000Z", "_published": "2026-10-10T10:37:36.776Z", "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045075387", "_status": "success", "_host": "GitHub-Actions", "_bioccheck": { "error": 5, "warning": 6, "note": 8 }, "_upstream": "https://github.com/bioc/TargetScoreData", "_commit": { "id": "ea3fb42b973cee7bfb70d14f8020a7b30a22bebf", "author": "lshep ", "committer": "lshep ", "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n", "time": 1777379161 }, "_maintainer": { "name": "Yue Li", "email": "yueli@cs.toronto.edu" }, "_distro": "resolute", "_jobs": [ { "job": 114193536864, "time": 127, "config": "bioc-checks", "r": "4.6.1", "check": "ERROR", "artifact": "11667153338" }, { "job": 114193536907, "time": 167, "config": "linux-devel-x86_64", "r": "4.7.0", "check": "NOTE", "artifact": "11666827857" }, { "job": 114193537071, "time": 191, "config": "linux-release-x86_64", "r": "4.6.1", "check": "NOTE", "artifact": "11667183535" }, { "job": 114192911693, "time": 212, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "11666662723" } ], "_registered": true, "_dependencies": [ { "package": "TargetScore", "role": "Suggests" }, { "package": "gplots", "role": "Suggests" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.49.0", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.48.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "rnaseqdata", "mirnadata", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 476, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 3, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/TargetScoreData.html" ], "_cranurl": false, "_exports": [ "get_miRNA_family_info", "get_miRNA_transfection_data", "get_precomputed_logFC", "get_precomputed_targetScores", "get_TargetScanHuman_contextScore", "get_TargetScanHuman_PCT", "get_validated_targets" ], "_help": [ { "page": "TargetScoreData-package", "title": "Processed human microRNA perturbation data from GEO, and sequence information from TargetScan, and targetScore from TargetScore", "topics": [ "TargetScoreData-package", "TargetScoreData" ] }, { "page": "get_miRNA_family_info", "title": "MicroRNA family information", "topics": [ "get_miRNA_family_info" ] }, { "page": "get_miRNA_transfection_data", "title": "get_miRNA_transfection_data", "topics": [ "get_miRNA_transfection_data" ] }, { "page": "get_precomputed_logFC", "title": "get_precomputed_logFC", "topics": [ "get_precomputed_logFC" ] }, { "page": "get_precomputed_targetScores", "title": "get_precomputed_targetScores", "topics": [ "get_precomputed_targetScores" ] }, { "page": "get_TargetScanHuman_contextScore", "title": "get_TargetScanHuman_contextScore", "topics": [ "get_TargetScanHuman_contextScore" ] }, { "page": "get_TargetScanHuman_PCT", "title": "get_TargetScanHuman_PCT", "topics": [ "get_TargetScanHuman_PCT" ] }, { "page": "get_validated_targets", "title": "get_validated_targets", "topics": [ "get_validated_targets" ] } ], "_rundeps": [], "_vignettes": [ { "source": "TargetScoreData.Rnw", "filename": "TargetScoreData.pdf", "title": "Processed human microRNA-overexpression data from GEO, and sequence information from TargetScan, and targetScore from TargetScore", "engine": "utils::Sweave", "headings": [ "MicroRNA perturbation datasets", "TargetScan context score and PCT", "TargetScore", "Session Info" ], "created": "2013-11-01 20:36:05", "modified": "2013-11-01 20:36:05", "commits": 1 } ], "_score": 3.3010299956639813, "_indexed": true, "_nocasepkg": "targetscoredata", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.49.0", "date": "2026-10-10T10:35:36.000Z", "distro": "resolute", "commit": "ea3fb42b973cee7bfb70d14f8020a7b30a22bebf", "fileid": "https://r2.ropensci.org/c040cb9b5d93ca78c2626fb5d87f9eb68d03988acacd02eeea0f05e278d2c72b", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045075387" }, { "r": "4.6.1", "os": "linux", "version": "1.49.0", "date": "2026-10-10T10:36:02.000Z", "distro": "resolute", "commit": "ea3fb42b973cee7bfb70d14f8020a7b30a22bebf", "fileid": "https://r2.ropensci.org/06885e1d19cd5f46567b3e40c0a6bee0136422d428eea958f56caf8e2ce2e5ae", "status": "success", "check": "NOTE", "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045075387" } ] }