Introduction | Bulk RNA-seq data | Single-cell RNA-seq data | Droplet data | FACS data | Explore data with iSEE | Session info | References
Package: TabulaMurisSenisData 1.19.0
Charlotte Soneson
TabulaMurisSenisData: Bulk and single-cell RNA-seq data from the Tabula Muris Senis project
This package provides access to RNA-seq data generated by the Tabula Muris Senis project via the Bioconductor project. The data is made available without restrictions by the Chan Zuckerberg Biohub. It is provided here without further processing, collected in the form of SingleCellExperiment objects.
Authors:
TabulaMurisSenisData_1.19.0.tar.gz
TabulaMurisSenisData_1.19.0.tar.gz(r-4.7-any)TabulaMurisSenisData_1.19.0.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
TabulaMurisSenisData/json (API)
| # Install 'TabulaMurisSenisData' in R: |
| install.packages('TabulaMurisSenisData', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fmicompbio/tabulamurissenisdata/issues
On BioConductor:TabulaMurisSenisData-1.19.0(data/experiment 3.24)TabulaMurisSenisData-1.18.0(data/experiment 3.23)
singlecelldataexperimentdatarnaseqdataexperimenthubdatapkg
Last updated from:c645a42b30. Checks:1 NOTE, 2 OK, 1 ERROR. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | NOTE | 195 | ||
| linux-devel | OK | 426 | ||
| source / vignettes | OK | 569 | ||
| linux-release | ERROR | 331 |
Exports:listTabulaMurisSenisTissuesTabulaMurisSenisBulkTabulaMurisSenisDropletTabulaMurisSenisFACS
Dependencies:abindAnnotationDbiAnnotationHubaskpassBiobaseBiocBaseUtilsBiocFileCacheBiocGenericsbiocmakeBiocManagerBiocVersionBiostringsbitbit64blobcachemclicpp11crayoncurlDBIdbplyrDelayedArraydir.expirydplyrExperimentHubfastmapfilelockgdatagenericsGenomicRangesgluegtoolsh5mreadHDF5Arrayhttrhttr2IRangesjsonliteKEGGRESTlatticelifecyclemagrittrMatrixMatrixGenericsmatrixStatsmemoisemimeopensslpillarpkgconfigpngpurrrR6rappdirsrhdf5rhdf5filtersRhdf5librlangRSQLiteS4ArraysS4VectorsSeqinfoSingleCellExperimentSparseArraystringistringrSummarizedExperimentsystibbletidyrtidyselectutf8vctrswithrXVectoryaml
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| List available tissues for the Tabula Muris Senis datasets | listTabulaMurisSenisTissues |
| Access the Tabula Muris Senis bulk RNA-seq data | TabulaMurisSenisBulk |
| Access the Tabula Muris Senis droplet single-cell RNA-seq data | TabulaMurisSenisDroplet |
| Get the Tabula Muris Senis FACS single-cell RNA-seq data | TabulaMurisSenisFACS |