{
  "_id": "6aca19e2fe5cc25786e84af9",
  "Package": "TabulaMurisSenisData",
  "Type": "Package",
  "Title": "Bulk and single-cell RNA-seq data from the Tabula Muris Senis\nproject",
  "Version": "1.19.0",
  "Authors@R": "c(person(\"Charlotte\", \"Soneson\", role = c(\"aut\", \"cre\"), \nemail = \"charlottesoneson@gmail.com\",\ncomment = c(ORCID = \"0000-0003-3833-2169\")),\nperson(\"Dania\", \"Machlab\", role = c(\"aut\"),\nemail = \"dania.machlab@gmail.com\",\ncomment = c(ORCID = \"0000-0002-2578-6930\")),\nperson(\"Federico\", \"Marini\", role = c(\"aut\"),\nemail = \"marinif@uni-mainz.de\",\ncomment = c(ORCID = \"0000-0003-3252-7758\")),\nperson(\"Stefania\", \"Astrologo\", role = c(\"aut\"),\nemail = \"stefania.astrologo@gmail.com\",\ncomment = c(ORCID = \"0000-0002-4845-2802\"))\n)",
  "Description": "This package provides access to RNA-seq data generated by\nthe Tabula Muris Senis project via the Bioconductor project.\nThe data is made available without restrictions by the Chan\nZuckerberg Biohub. It is provided here without further\nprocessing, collected in the form of SingleCellExperiment\nobjects.",
  "License": "MIT + file LICENSE",
  "Encoding": "UTF-8",
  "RoxygenNote": "7.3.3",
  "URL": "https://github.com/fmicompbio/TabulaMurisSenisData",
  "BugReports": "https://github.com/fmicompbio/TabulaMurisSenisData/issues",
  "VignetteBuilder": "knitr",
  "biocViews": "SingleCellData, ExperimentData, RNASeqData, ExperimentHub",
  "Config/pak/sysreqs": "libicu-dev libpng-dev libssl-dev zlib1g-dev",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:35:37 UTC",
  "RemoteUrl": "https://github.com/bioc/TabulaMurisSenisData",
  "RemoteRef": "HEAD",
  "RemoteSha": "c645a42b308df3df76df1cf5b0b3d6956d848464",
  "NeedsCompilation": "no",
  "Packaged": {
    "Date": "2026-10-10 10:48:29 UTC",
    "User": "root"
  },
  "Author": "Charlotte Soneson [aut, cre] (ORCID:\n<https://orcid.org/0000-0003-3833-2169>),\nDania Machlab [aut] (ORCID: <https://orcid.org/0000-0002-2578-6930>),\nFederico Marini [aut] (ORCID: <https://orcid.org/0000-0003-3252-7758>),\nStefania Astrologo [aut] (ORCID:\n<https://orcid.org/0000-0002-4845-2802>)",
  "Maintainer": "Charlotte Soneson <charlottesoneson@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "TabulaMurisSenisData_1.19.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/6fca12101f909721c0813071822db08490ebc612fb608d6e004d9fdad736b94e",
  "_filesize": 2276483,
  "_sha256": "6fca12101f909721c0813071822db08490ebc612fb608d6e004d9fdad736b94e",
  "_expires": "2027-01-18T10:56:33.000Z",
  "_created": "2026-10-10T10:48:29.000Z",
  "_published": "2026-10-10T10:56:34.750Z",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/38045653298",
  "_status": "success",
  "_host": "GitHub-Actions",
  "_bioccheck": {
    "error": 0,
    "warning": 0,
    "note": 5
  },
  "_upstream": "https://github.com/bioc/TabulaMurisSenisData",
  "_commit": {
    "id": "c645a42b308df3df76df1cf5b0b3d6956d848464",
    "author": "lshep <lori.shepherd@roswellpark.org>",
    "committer": "lshep <lori.shepherd@roswellpark.org>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777379737
  },
  "_maintainer": {
    "name": "Charlotte Soneson",
    "email": "charlottesoneson@gmail.com",
    "login": "csoneson",
    "orcid": "0000-0003-3833-2169",
    "description": "",
    "uuid": 5628952
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 114196219169,
      "time": 195,
      "config": "bioc-checks",
      "r": "4.6.1",
      "check": "NOTE",
      "artifact": "11666624261"
    },
    {
      "job": 114196219240,
      "time": 426,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "OK",
      "artifact": "11666799410"
    },
    {
      "job": 114196219182,
      "time": 331,
      "config": "linux-release-x86_64",
      "r": "4.6.1",
      "check": "ERROR",
      "artifact": "11667749490"
    },
    {
      "job": 114194582920,
      "time": 569,
      "config": "source",
      "r": "4.6.1",
      "check": "OK",
      "artifact": "11667464526"
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "ExperimentHub",
      "role": "Imports"
    },
    {
      "package": "SingleCellExperiment",
      "role": "Imports"
    },
    {
      "package": "HDF5Array",
      "role": "Imports"
    },
    {
      "package": "SummarizedExperiment",
      "role": "Imports"
    },
    {
      "package": "gdata",
      "role": "Imports"
    },
    {
      "package": "AnnotationHub",
      "role": "Imports"
    },
    {
      "package": "ggplot2",
      "role": "Suggests"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    },
    {
      "package": "iSEE",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 0,
  "_updates": [
    {
      "week": "2025-42",
      "n": 5
    },
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.19.0",
      "bioc": "3.24",
      "repository": "data/experiment"
    },
    {
      "branch": "release",
      "version": "1.18.0",
      "bioc": "3.23",
      "repository": "data/experiment"
    }
  ],
  "_topics": [
    "singlecelldata",
    "experimentdata",
    "rnaseqdata",
    "experimenthub",
    "datapkg"
  ],
  "_stars": 4,
  "_contributors": [
    {
      "user": "csoneson",
      "count": 60,
      "uuid": 5628952
    },
    {
      "user": "federicomarini",
      "count": 25,
      "uuid": 7447478
    },
    {
      "user": "machlabd",
      "count": 13,
      "uuid": 13626534
    },
    {
      "user": "hpages",
      "count": 8,
      "uuid": 8810451
    },
    {
      "user": "lshep",
      "count": 8,
      "uuid": 18724380
    },
    {
      "user": "jwokaty",
      "count": 4,
      "uuid": 1744257
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 476,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/fmicompbio/tabulamurissenisdata",
  "_searchresults": 45,
  "_datapkg": true,
  "_rbuild": "4.6.1",
  "_assets": [
    "extra/citation.cff",
    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/manual.pdf",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
    "extra/TabulaMurisSenisData.html",
    "LICENSE"
  ],
  "_cranurl": false,
  "_exports": [
    "listTabulaMurisSenisTissues",
    "TabulaMurisSenisBulk",
    "TabulaMurisSenisDroplet",
    "TabulaMurisSenisFACS"
  ],
  "_help": [
    {
      "page": "listTabulaMurisSenisTissues",
      "title": "List available tissues for the Tabula Muris Senis datasets",
      "topics": [
        "listTabulaMurisSenisTissues"
      ]
    },
    {
      "page": "TabulaMurisSenisBulk",
      "title": "Access the Tabula Muris Senis bulk RNA-seq data",
      "topics": [
        "TabulaMurisSenisBulk"
      ]
    },
    {
      "page": "TabulaMurisSenisDroplet",
      "title": "Access the Tabula Muris Senis droplet single-cell RNA-seq data",
      "topics": [
        "TabulaMurisSenisDroplet"
      ]
    },
    {
      "page": "TabulaMurisSenisFACS",
      "title": "Get the Tabula Muris Senis FACS single-cell RNA-seq data",
      "topics": [
        "TabulaMurisSenisFACS"
      ]
    }
  ],
  "_readme": "https://github.com/bioc/TabulaMurisSenisData/raw/HEAD/README.md",
  "_rundeps": [
    "abind",
    "AnnotationDbi",
    "AnnotationHub",
    "askpass",
    "Biobase",
    "BiocBaseUtils",
    "BiocFileCache",
    "BiocGenerics",
    "biocmake",
    "BiocManager",
    "BiocVersion",
    "Biostrings",
    "bit",
    "bit64",
    "blob",
    "cachem",
    "cli",
    "cpp11",
    "crayon",
    "curl",
    "DBI",
    "dbplyr",
    "DelayedArray",
    "dir.expiry",
    "dplyr",
    "ExperimentHub",
    "fastmap",
    "filelock",
    "gdata",
    "generics",
    "GenomicRanges",
    "glue",
    "gtools",
    "h5mread",
    "HDF5Array",
    "httr",
    "httr2",
    "IRanges",
    "jsonlite",
    "KEGGREST",
    "lattice",
    "lifecycle",
    "magrittr",
    "Matrix",
    "MatrixGenerics",
    "matrixStats",
    "memoise",
    "mime",
    "openssl",
    "pillar",
    "pkgconfig",
    "png",
    "purrr",
    "R6",
    "rappdirs",
    "rhdf5",
    "rhdf5filters",
    "Rhdf5lib",
    "rlang",
    "RSQLite",
    "S4Arrays",
    "S4Vectors",
    "Seqinfo",
    "SingleCellExperiment",
    "SparseArray",
    "stringi",
    "stringr",
    "SummarizedExperiment",
    "sys",
    "tibble",
    "tidyr",
    "tidyselect",
    "utf8",
    "vctrs",
    "withr",
    "XVector",
    "yaml"
  ],
  "_vignettes": [
    {
      "source": "TabulaMurisSenisData.Rmd",
      "filename": "TabulaMurisSenisData.html",
      "title": "TabulaMurisSenisData",
      "author": "Charlotte Soneson, Dania Machlab, Federico Marini",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Bulk RNA-seq data",
        "Single-cell RNA-seq data",
        "Droplet data",
        "FACS data",
        "Explore data with iSEE",
        "Session info",
        "References"
      ],
      "created": "2020-09-24 14:32:14",
      "modified": "2021-07-27 10:34:50",
      "commits": 6
    }
  ],
  "_score": 6.1303337684950066,
  "_indexed": true,
  "_nocasepkg": "tabulamurissenisdata",
  "_universes": [
    "bioc",
    "csoneson",
    "fmicompbio"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.19.0",
      "date": "2026-10-10T10:52:15.000Z",
      "distro": "resolute",
      "commit": "c645a42b308df3df76df1cf5b0b3d6956d848464",
      "fileid": "https://r2.ropensci.org/18957939b1f1e469c6fb50c2d5e51bab409c8124f5dd3290dfe21b2024ecdb7f",
      "status": "success",
      "check": "OK",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045653298"
    },
    {
      "r": "4.6.1",
      "os": "linux",
      "version": "1.19.0",
      "date": "2026-10-10T10:52:13.000Z",
      "distro": "resolute",
      "commit": "c645a42b308df3df76df1cf5b0b3d6956d848464",
      "fileid": "https://r2.ropensci.org/5a91d5002f874880de35dc07dc4888717ac6f051a1325757f87e0171eaf0bb50",
      "status": "failure",
      "check": "ERROR",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/38045653298"
    }
  ]
}