Package: TPP2D 1.21.0
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Nils Kurzawa
TPP2D: Detection of ligand-protein interactions from 2D thermal profiles (DLPTP)
Detection of ligand-protein interactions from 2D thermal profiles (DLPTP), Performs an FDR-controlled analysis of 2D-TPP experiments by functional analysis of dose-response curves across temperatures.
Authors:
TPP2D_1.21.0.tar.gz
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TPP2D.pdf |TPP2D.html✨
TPP2D/json (API)
NEWS
# Install 'TPP2D' in R: |
install.packages('TPP2D', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
- config_tab - Example config table for a import of a simulated 2D-TPP cell extract dataset
- raw_dat_list - Example raw data for a subset of a simulated 2D-TPP cell extract dataset
- simulated_cell_extract_df - Example subset of a simulated 2D-TPP cell extract dataset
On BioConductor:TPP2D-1.21.0(bioc 3.20)TPP2D-1.20.0(bioc 3.19)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated 2 months agofrom:7a3f22514d
Exports:annotateDataListbootstrapNullbootstrapNullAlternativeModelbootstrapNullAlternativeModelFastcompeteModelscomputeFstatcomputeFStatFromParamsconfigWide2LongfilterOutContaminantsfindHitsfitAndEvalDatasetfitH0ModelfitH1ModelgetFDRgetModelParamsDfgetPEC504TemperaturegetPvaluesgg_qqimport2dDatasetimport2dMainplot2dTppFcHeatmapplot2dTppFitplot2dTppProfileplot2dTppRelProfileplot2dTppVolcanorecomputeSignalFromRatiosrenameColumnsresolveAmbiguousProteinNamesrunTPP2DTPP_importCheckConfigTable
Dependencies:BHBiocParallelbitopsclicodetoolscolorspacecpp11doParalleldplyrfansifarverforeachformatRfutile.loggerfutile.optionsgenericsggplot2gluegtableisobanditeratorslabelinglambda.rlatticelifecyclelimmamagrittrMASSMatrixmgcvmunsellnlmeopenxlsxpillarpkgconfigpurrrR6RColorBrewerRcppRCurlrlangscalessnowstatmodstringistringrtibbletidyrtidyselectutf8vctrsviridisLitewithrzip