Package: StatescopeR 1.1.3

Mischa Steketee

StatescopeR: StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles

StatescopeR is an R wrapper around Statescope, a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.

Authors:Mischa Steketee [aut, cre], Bauke Ylstra [ths], Yongsoo Kim [ths], KWF Kankerbestrijding [fnd]

StatescopeR_1.1.3.tar.gz
StatescopeR_1.1.3.zip(r-4.7-any)StatescopeR_1.1.3.zip(r-4.6-any)StatescopeR_1.1.3.zip(r-4.5-any)
StatescopeR_1.1.3.tgz(r-4.6-any)StatescopeR_1.1.3.tgz(r-4.5-any)
StatescopeR_1.1.3.tar.gz(r-4.7-any)StatescopeR_1.1.3.tar.gz(r-4.6-any)
StatescopeR_1.1.3.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
StatescopeR/json (API)

# Install 'StatescopeR' in R:
install.packages('StatescopeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tgac-vumc/statescoper/issues

On BioConductor:StatescopeR-1.1.2(bioc 3.24)StatescopeR-1.0.2(bioc 3.23)

geneexpressionrnaseqsinglecellbayesiantranscriptomicssoftware

3.74 score 4 scripts 214 downloads 14 exports 68 dependencies

Last updated from:0535cf1c7c. Checks:6 WARNING, 3 ERROR, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING166
linux-develERROR1282
source / vignettesERROR1003
linux-releaseERROR1411
macos-releaseWARNING977
macos-oldrelWARNING1134
windows-develWARNING2437
windows-releaseWARNING1591
windows-oldrelWARNING2400
wasm-releaseOK173

Exports:barplot_stateloadingsBLADE_deconvolutionconcatenate_statescorescreate_signatureEcotypeDiscoveryEcotypeRetrievalfetch_signaturefraction_evalfraction_heatmapgather_true_fractionsRefinementselect_genesStateDiscoveryStateRetrieval

Dependencies:abindassortheadbasiliskbeachmatBiobaseBiocGenericsbiocmakeBiocNeighborscirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayonDelayedArraydigestdir.expirydoParallelfarverfilelockforeachgenericsGenomicRangesGetoptLongggplot2GlobalOptionsgluegtablehereIRangesisobanditeratorsjsonlitelabelinglatticelifecycleMatrixMatrixGenericsmatrixStatspngR6rappdirsRColorBrewerRcppRcppTOMLreticulateRigraphlibrjsonrlangrprojrootS4ArraysS4VectorsS7scalesscrapperSeqinfoshapeSingleCellExperimentSparseArraySummarizedExperimentvctrsviridisLitewithrXVector