Package: StatescopeR 1.1.0

Mischa Steketee

StatescopeR: StatescopeR framework for discovery of cell states from cell type-specific gene expression profiles inferred from bulk mRNA profiles

StatescopeR is an R wrapper around Statescope, a computational framework designed to discover cell states from cell type-specific gene expression profiles inferred from bulk RNA profiles.

Authors:Mischa Steketee [aut, cre], Bauke Ylstra [ths], Yongsoo Kim [ths], KWF Kankerbestrijding [fnd]

StatescopeR_1.1.0.tar.gz
StatescopeR_1.1.0.zip(r-4.7)StatescopeR_1.1.0.zip(r-4.6)StatescopeR_1.1.0.zip(r-4.5)
StatescopeR_1.1.0.tgz(r-4.6-any)StatescopeR_1.1.0.tgz(r-4.5-any)
StatescopeR_1.1.0.tar.gz(r-4.7-any)StatescopeR_1.1.0.tar.gz(r-4.6-any)
StatescopeR_1.1.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
StatescopeR/json (API)

# Install 'StatescopeR' in R:
install.packages('StatescopeR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/tgac-vumc/statescoper/issues

On BioConductor:StatescopeR-1.1.0(bioc 3.24)StatescopeR-1.0.1(bioc 3.23)

geneexpressionrnaseqsinglecellbayesiantranscriptomicssoftware

3.81 score 4 scripts 10 exports 89 dependencies

Last updated from:1593c2ffa5. Checks:1 NOTE, 3 ERROR, 5 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksNOTE263
linux-devel-x86_64ERROR1351
source / vignettesERROR1254
linux-release-x86_64ERROR1425
macos-release-arm64WARNING720
macos-oldrel-arm64WARNING815
windows-develWARNING1768
windows-releaseWARNING1687
windows-oldrelWARNING1739
wasm-releaseOK251

Exports:barplot_stateloadingsBLADE_deconvolutioncreate_signaturefetch_signaturefraction_evalfraction_heatmapgather_true_fractionsRefinementselect_genesStateDiscovery

Dependencies:abindassortheadbasiliskbeachmatBHBiobaseBiocGenericsBiocNeighborsBiocParallelBiocSingularblustercirclizecliclueclustercodetoolscolorspaceComplexHeatmapcowplotcpp11crayonDelayedArraydigestdir.expirydoParalleldqrngedgeRfarverfilelockforeachformatRfutile.loggerfutile.optionsgenericsGenomicRangesGetoptLongggplot2GlobalOptionsgluegtablehereigraphIRangesirlbaisobanditeratorsjsonlitelabelinglambda.rlatticelifecyclelimmalocfitmagrittrMatrixMatrixGenericsmatrixStatsmetapodpkgconfigpngR6rappdirsRColorBrewerRcppRcppTOMLreticulaterjsonrlangrprojrootrsvdS4ArraysS4VectorsS7ScaledMatrixscalesscranscuttleSeqinfoshapeSingleCellExperimentsitmosnowSparseArraystatmodSummarizedExperimentvctrsviridisLitewithrXVector