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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "StatescopeR" in publications use:'
type: software
license: MIT
title: 'StatescopeR: StatescopeR framework for discovery of cell states from cell
  type-specific gene expression profiles inferred from bulk mRNA profiles'
version: 1.1.0
doi: 10.21203/rs.3.rs-4252952/v1
identifiers:
- type: doi
  value: 10.32614/CRAN.package.StatescopeR
abstract: StatescopeR is an R wrapper around Statescope, a computational framework
  designed to discover cell states from cell type-specific gene expression profiles
  inferred from bulk RNA profiles.
authors:
- family-names: Steketee
  given-names: Mischa
  email: m.f.b.steketee@amsterdamumc.nl
  orcid: https://orcid.org/0000-0001-7138-7554
preferred-citation:
  type: article
  title: Hidden RNA profiles of cells in the tumor microenvironment accurately revealed
    by malignant cell fraction-informed deconvolution
  authors:
  - family-names: Janssen
    given-names: Jurriaan
  - family-names: Radonic
    given-names: Teodora
  - family-names: Steketee
    given-names: Mischa
    email: m.f.b.steketee@amsterdamumc.nl
    orcid: https://orcid.org/0000-0001-7138-7554
  - family-names: Asten
    given-names: Saskia
    name-particle: van
  - family-names: Eijk
    given-names: Paul
  - family-names: Maldegem
    given-names: Febe
    name-particle: van
  - family-names: Noske
    given-names: David
  - family-names: Bahce
    given-names: Idris
  - family-names: Vallejo
    given-names: Juan Garcia
  - family-names: Wiel
    given-names: Mark
    name-particle: van de
  - family-names: Ylstra
    given-names: Bauke
  - family-names: Kim
    given-names: Yongsoo
  year: '2024'
  journal: Research Square
  doi: 10.21203/rs.3.rs-4252952/v1
  url: https://www.researchgate.net/publication/380850052_Hidden_RNA_profiles_of_cells_in_the_tumor_microenvironment_accurately_revealed_by_malignant_cell_fraction-informed_deconvolution
repository: https://bioc.r-universe.dev
repository-code: https://github.com/tgac-vumc/StatescopeR
commit: 1593c2ffa589fbd7a374147f06baa3e4920d812b
url: https://github.com/tgac-vumc/StatescopeR
date-released: '2026-04-28'
contact:
- family-names: Steketee
  given-names: Mischa
  email: m.f.b.steketee@amsterdamumc.nl
  orcid: https://orcid.org/0000-0001-7138-7554