Package: SpatialArtifacts 1.1.0

Introduction | Installation | Input data format | Platform Support | Two key steps | The detection phase | The classification phase | Helpful information on parameters | Platform selection | Example use cases | Parameters for detectEdgeArtifacts() | For all platforms | For standard Visium | For VisiumHD | Parameters for classifyEdgeArtifacts() | Platform Comparison Summary | Understanding the output columns | Example: Standard Visium workflow | Data preparation: converting to dense matrix | VisiumHD Workflow Example | VisiumHD 16µm Resolution Example | VisiumHD 8µm Resolution Example | Key VisiumHD Considerations | Visualization: QC Metrics and Detection Results | Classification Summary | Final Classification Summary | Raw Edge Detection Summary | Quality Control Validation | Filtering Out Problematic Spots (Optional) | Conclusion | Session Information