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# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
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cff-version: 1.2.0
message: 'To cite package "SpatialArtifacts" in publications use:'
type: software
license: Artistic-2.0
title: 'SpatialArtifacts: Identification and Classification of Spatial Artifacts in
  Visium and Visium HD Data'
version: 1.1.0
doi: 10.32614/CRAN.package.SpatialArtifacts
abstract: SpatialArtifacts provides a data-driven two-step workflow to identify, classify,
  and handle spatial artifacts in spatial transcriptomics data. The package combines
  median absolute deviation (MAD)-based outlier detection with morphological image
  processing (fill, outline, and star patterns) to detect edge and interior artifacts.
  It supports multiple platforms including 10x Genomics Visium (standard and HD),
  allowing for consistent quality control across different spatial resolutions.
authors:
- family-names: He
  given-names: Harriet Jiali
  email: jhe46@jh.edu
  orcid: https://orcid.org/0009-0003-7827-2735
- family-names: Thompson
  given-names: Jacqueline R.
  email: jthom338@jh.edu
- family-names: Totty
  given-names: Michael
  email: mtotty2@jh.edu
- family-names: Hicks
  given-names: Stephanie C.
  email: shicks19@jhu.edu
  orcid: https://orcid.org/0000-0002-7858-0231
repository: https://bioc.r-universe.dev
repository-code: https://github.com/CambridgeCat13/SpatialArtifacts
commit: 699127a618c09d2e66f5e3f9b07697e0367adc81
url: https://github.com/CambridgeCat13/SpatialArtifacts
date-released: '2026-05-04'
contact:
- family-names: He
  given-names: Harriet Jiali
  email: jhe46@jh.edu
  orcid: https://orcid.org/0009-0003-7827-2735