Package: SVM2CRMdata 1.45.1
Guidantonio Malagoli Tagliazucchi
SVM2CRMdata: An example dataset for use with the SVM2CRM package
An example dataset for use with the SVM2CRM package.
Authors:
SVM2CRMdata_1.45.1.tar.gz
SVM2CRMdata_1.45.1.tar.gz(r-4.7-any)SVM2CRMdata_1.45.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SVM2CRMdata/json (API)
| # Install 'SVM2CRMdata' in R: |
| install.packages('SVM2CRMdata', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- CD4_matrixInputSVMbin100window1000 - Histone modification map from CD4
- train_negative - Random genomic regions of ChIP-seq without enhancers
- train_positive - ChIP-seq signal in correspondence of enhancers
On BioConductor:SVM2CRMdata-1.45.1(data/experiment 3.24)SVM2CRMdata-1.44.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatachipseqhistonemodificationpreprocessingdataimportdatapkg
Last updated from:7c525e5d0f. Checks:1 ERROR, 2 WARNING, 1 OK. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 136 | ||
| linux-devel | WARNING | 436 | ||
| source / vignettes | OK | 1167 | ||
| linux-release | WARNING | 354 |
Exports:
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Histone modification map from CD4 | CD4_matrixInputSVMbin100window1000 |
| Histone modification ChIP-seq data in CD4 | CD4-H2AK5ac.sort |
| Histone modification ChIP-seq data in CD4 | CD4-H2AK9ac.sort |
| Histone modification ChIP-seq data in CD4 | CD4-H3K23ac.sort |
| Histone modification ChIP-seq data in CD4 | CD4-H3K27ac.sort |
| A bed file of p300 genomic regions | GSM393946.distal.p300fromTSS |
| Histone modification ChIP-seq data in CD4 | H3K27me3.sort |
| Histone modification ChIP-seq data in CD4 | H3K4me1.sort |
| Histone modification ChIP-seq data in CD4 | H3K4me2.sort |
| Histone modification ChIP-seq data in CD4 | H3K4me3.sort |
| P300 binding sites from CD4 | p300.distal.fromTSS |
| A bed file with the coordinates of random regions in Hg18 | random.region.hg18.nop300 |
| An example dataset for the SVM2CRM package | SVM2CRMdata |
| Random genomic regions of ChIP-seq without enhancers | train_negative |
| ChIP-seq signal in correspondence of enhancers | train_positive |