{ "_id": "6ae703021e2c7b3a4f52f9d2", "Package": "SVM2CRMdata", "Type": "Package", "Title": "An example dataset for use with the SVM2CRM package", "Version": "1.45.1", "Date": "2013-11-21", "Author": "Guidantonio Malagoli Tagliazucchi", "Maintainer": "Guidantonio Malagoli Tagliazucchi\n", "Description": "An example dataset for use with the SVM2CRM package.", "License": "LGPL (>= 2)", "biocViews": "ExperimentData, ChIPSeq, HistoneModification, Preprocessing,\nDataImport", "ZipData": "no", "LazyLoad": "yes", "NeedsCompilation": "no", "PackageStatus": "Deprecated", "Repository": "https://bioc.r-universe.dev", "Date/Publication": "2026-09-14 15:01:14 UTC", "RemoteUrl": "https://git.bioconductor.org/packages/SVM2CRMdata", "RemoteRef": "HEAD", "RemoteSha": "7c525e5d0f66a48f9bfc666d90d91a4cff2e5930", "Packaged": { "Date": "2026-11-01 08:56:52 UTC", "User": "root" }, "_user": "bioc", "_type": "src", "_file": "SVM2CRMdata_1.45.1.tar.gz", "_fileid": "https://r2.ropensci.org/e1fd317421f9bf6a30b6dff34ec2875d5ea021bf64de89da558ecbb03cbd38ed", "_filesize": 364247661, "_sha256": "e1fd317421f9bf6a30b6dff34ec2875d5ea021bf64de89da558ecbb03cbd38ed", "_expires": "2027-02-09T09:14:29.000Z", "_created": "2026-11-01T08:56:52.000Z", "_published": "2026-11-01T09:14:42.669Z", "_upstream": "https://git.bioconductor.org/packages/SVM2CRMdata", "_status": "success", "_maintainer": { "name": "Guidantonio Malagoli Tagliazucchi", "email": "guidantonio.malagolitagliazucchi@unimore.it" }, "_jobs": [ { "job": 124800991677, "time": -2707, "config": "source", "r": "4.6.1", "check": "OK", "artifact": "13077498059" } ], "_bioccheck": { "error": 3, "warning": 9, "note": 6 }, "_buildurl": "https://github.com/r-universe/bioc/actions/runs/41290622596", "_commit": { "id": "7c525e5d0f66a48f9bfc666d90d91a4cff2e5930", "author": "lshep ", "committer": "lshep ", "message": "unresponsive\n\n - large file and bounced email\n", "time": 1789398074 }, "_distro": "resolute", "_host": "GitHub-Actions", "_registered": true, "_dependencies": [ { "package": "R", "version": ">= 3.2.0", "role": "Depends" } ], "_owner": "bioc", "_selfowned": true, "_usedby": 0, "_updates": [ { "week": "2025-44", "n": 2 }, { "week": "2026-18", "n": 2 }, { "week": "2026-38", "n": 1 } ], "_tags": [], "_bioc": [ { "branch": "devel", "version": "1.45.1", "bioc": "3.24", "repository": "data/experiment" }, { "branch": "release", "version": "1.44.0", "bioc": "3.23", "repository": "data/experiment" } ], "_topics": [ "experimentdata", "chipseq", "histonemodification", "preprocessing", "dataimport", "datapkg" ], "_userbio": { "uuid": 2286807, "type": "organization", "name": "Bioconductor", "followers": 481, "description": "Software for the analysis and comprehension of high-throughput genomic data" }, "_searchresults": 8, "_datapkg": true, "_rbuild": "4.6.1", "_assets": [ "extra/citation.cff", "extra/citation.html", "extra/citation.json", "extra/citation.txt", "extra/contents.json", "extra/manual.pdf", "extra/SVM2CRMdata.html" ], "_cranurl": false, "_exports": [], "_datasets": [ { "name": "CD4_matrixInputSVMbin100window1000", "title": "Histone modification map from CD4", "object": "CD4_matrixInputSVMbin100window1000", "file": "CD4_matrixInputSVMbin100window1000.rda", "class": [ "data.frame" ], "fields": [], "rows": 123625, "table": true, "tojson": false }, { "name": "train_negative", "title": "Random genomic regions of ChIP-seq without enhancers", "object": "train_negative", "file": "train_negative.rda", "class": [ "data.frame" ], "fields": [ "chromosome", "label", "start", "end", "X1.nrow.tabrid.", "CD4.H2AK5ac.sort.txt.signal", "CD4.H2AK5ac.sort.txt.signal.1", "CD4.H2AK5ac.sort.txt.signal.2", "CD4.H2AK5ac.sort.txt.signal.3", "CD4.H2AK5ac.sort.txt.signal.4", "CD4.H2AK5ac.sort.txt.signal.5", "CD4.H2AK5ac.sort.txt.signal.6", "CD4.H2AK5ac.sort.txt.signal.7", "CD4.H2AK5ac.sort.txt.signal.8", "CD4.H2AK5ac.sort.txt.signal.9", "CD4.H2AK9ac.sort.txt.signal", "CD4.H2AK9ac.sort.txt.signal.1", "CD4.H2AK9ac.sort.txt.signal.2", "CD4.H2AK9ac.sort.txt.signal.3", "CD4.H2AK9ac.sort.txt.signal.4", "CD4.H2AK9ac.sort.txt.signal.5", "CD4.H2AK9ac.sort.txt.signal.6", "CD4.H2AK9ac.sort.txt.signal.7", "CD4.H2AK9ac.sort.txt.signal.8", "CD4.H2AK9ac.sort.txt.signal.9", "CD4.H3K23ac.sort.txt.signal", "CD4.H3K23ac.sort.txt.signal.1", "CD4.H3K23ac.sort.txt.signal.2", "CD4.H3K23ac.sort.txt.signal.3", "CD4.H3K23ac.sort.txt.signal.4", "CD4.H3K23ac.sort.txt.signal.5", "CD4.H3K23ac.sort.txt.signal.6", "CD4.H3K23ac.sort.txt.signal.7", "CD4.H3K23ac.sort.txt.signal.8", "CD4.H3K23ac.sort.txt.signal.9", "CD4.H3K27ac.sort.txt.signal", "CD4.H3K27ac.sort.txt.signal.1", "CD4.H3K27ac.sort.txt.signal.2", "CD4.H3K27ac.sort.txt.signal.3", "CD4.H3K27ac.sort.txt.signal.4", "CD4.H3K27ac.sort.txt.signal.5", "CD4.H3K27ac.sort.txt.signal.6", "CD4.H3K27ac.sort.txt.signal.7", "CD4.H3K27ac.sort.txt.signal.8", "CD4.H3K27ac.sort.txt.signal.9", "H3K27me3.sort.txt.signal", "H3K27me3.sort.txt.signal.1", "H3K27me3.sort.txt.signal.2", "H3K27me3.sort.txt.signal.3", "H3K27me3.sort.txt.signal.4", "H3K27me3.sort.txt.signal.5", "H3K27me3.sort.txt.signal.6", "H3K27me3.sort.txt.signal.7", "H3K27me3.sort.txt.signal.8", "H3K27me3.sort.txt.signal.9", "H3K4me1.sort.txt.signal", "H3K4me1.sort.txt.signal.1", "H3K4me1.sort.txt.signal.2", "H3K4me1.sort.txt.signal.3", "H3K4me1.sort.txt.signal.4", "H3K4me1.sort.txt.signal.5", "H3K4me1.sort.txt.signal.6", "H3K4me1.sort.txt.signal.7", "H3K4me1.sort.txt.signal.8", "H3K4me1.sort.txt.signal.9", "H3K4me2.sort.txt.signal", "H3K4me2.sort.txt.signal.1", "H3K4me2.sort.txt.signal.2", "H3K4me2.sort.txt.signal.3", "H3K4me2.sort.txt.signal.4", "H3K4me2.sort.txt.signal.5", "H3K4me2.sort.txt.signal.6", "H3K4me2.sort.txt.signal.7", "H3K4me2.sort.txt.signal.8", "H3K4me2.sort.txt.signal.9", "H3K4me3.sort.txt.signal", "H3K4me3.sort.txt.signal.1", "H3K4me3.sort.txt.signal.2", "H3K4me3.sort.txt.signal.3", "H3K4me3.sort.txt.signal.4", "H3K4me3.sort.txt.signal.5", "H3K4me3.sort.txt.signal.6", "H3K4me3.sort.txt.signal.7", "H3K4me3.sort.txt.signal.8", "H3K4me3.sort.txt.signal.9" ], "rows": 3224, "table": true, "tojson": true }, { "name": "train_positive", "title": "ChIP-seq signal in correspondence of enhancers", "object": "train_positive", "file": "train_positive.rda", "class": [ "data.frame" ], "fields": [ "chromosome", "label", "start", "end", "X1.nrow.tabrid.", "CD4.H2AK5ac.sort.txt.signal", "CD4.H2AK5ac.sort.txt.signal.1", "CD4.H2AK5ac.sort.txt.signal.2", "CD4.H2AK5ac.sort.txt.signal.3", "CD4.H2AK5ac.sort.txt.signal.4", "CD4.H2AK5ac.sort.txt.signal.5", "CD4.H2AK5ac.sort.txt.signal.6", "CD4.H2AK5ac.sort.txt.signal.7", "CD4.H2AK5ac.sort.txt.signal.8", "CD4.H2AK5ac.sort.txt.signal.9", "CD4.H2AK9ac.sort.txt.signal", "CD4.H2AK9ac.sort.txt.signal.1", "CD4.H2AK9ac.sort.txt.signal.2", "CD4.H2AK9ac.sort.txt.signal.3", "CD4.H2AK9ac.sort.txt.signal.4", "CD4.H2AK9ac.sort.txt.signal.5", "CD4.H2AK9ac.sort.txt.signal.6", "CD4.H2AK9ac.sort.txt.signal.7", "CD4.H2AK9ac.sort.txt.signal.8", "CD4.H2AK9ac.sort.txt.signal.9", "CD4.H3K23ac.sort.txt.signal", "CD4.H3K23ac.sort.txt.signal.1", "CD4.H3K23ac.sort.txt.signal.2", "CD4.H3K23ac.sort.txt.signal.3", "CD4.H3K23ac.sort.txt.signal.4", "CD4.H3K23ac.sort.txt.signal.5", "CD4.H3K23ac.sort.txt.signal.6", "CD4.H3K23ac.sort.txt.signal.7", "CD4.H3K23ac.sort.txt.signal.8", "CD4.H3K23ac.sort.txt.signal.9", "CD4.H3K27ac.sort.txt.signal", "CD4.H3K27ac.sort.txt.signal.1", "CD4.H3K27ac.sort.txt.signal.2", "CD4.H3K27ac.sort.txt.signal.3", "CD4.H3K27ac.sort.txt.signal.4", "CD4.H3K27ac.sort.txt.signal.5", "CD4.H3K27ac.sort.txt.signal.6", "CD4.H3K27ac.sort.txt.signal.7", "CD4.H3K27ac.sort.txt.signal.8", "CD4.H3K27ac.sort.txt.signal.9", "H3K27me3.sort.txt.signal", "H3K27me3.sort.txt.signal.1", "H3K27me3.sort.txt.signal.2", "H3K27me3.sort.txt.signal.3", "H3K27me3.sort.txt.signal.4", "H3K27me3.sort.txt.signal.5", "H3K27me3.sort.txt.signal.6", "H3K27me3.sort.txt.signal.7", "H3K27me3.sort.txt.signal.8", "H3K27me3.sort.txt.signal.9", "H3K4me1.sort.txt.signal", "H3K4me1.sort.txt.signal.1", "H3K4me1.sort.txt.signal.2", "H3K4me1.sort.txt.signal.3", "H3K4me1.sort.txt.signal.4", "H3K4me1.sort.txt.signal.5", "H3K4me1.sort.txt.signal.6", "H3K4me1.sort.txt.signal.7", "H3K4me1.sort.txt.signal.8", "H3K4me1.sort.txt.signal.9", "H3K4me2.sort.txt.signal", "H3K4me2.sort.txt.signal.1", "H3K4me2.sort.txt.signal.2", "H3K4me2.sort.txt.signal.3", "H3K4me2.sort.txt.signal.4", "H3K4me2.sort.txt.signal.5", "H3K4me2.sort.txt.signal.6", "H3K4me2.sort.txt.signal.7", "H3K4me2.sort.txt.signal.8", "H3K4me2.sort.txt.signal.9", "H3K4me3.sort.txt.signal", "H3K4me3.sort.txt.signal.1", "H3K4me3.sort.txt.signal.2", "H3K4me3.sort.txt.signal.3", "H3K4me3.sort.txt.signal.4", "H3K4me3.sort.txt.signal.5", "H3K4me3.sort.txt.signal.6", "H3K4me3.sort.txt.signal.7", "H3K4me3.sort.txt.signal.8", "H3K4me3.sort.txt.signal.9" ], "rows": 517, "table": true, "tojson": true } ], "_help": [ { "page": "CD4_matrixInputSVMbin100window1000", "title": "Histone modification map from CD4", "topics": [ "CD4_matrixInputSVMbin100window1000" ] }, { "page": "CD4-H2AK5ac.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "CD4-H2AK5ac.sort" ] }, { "page": "CD4-H2AK9ac.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "CD4-H2AK9ac.sort" ] }, { "page": "CD4-H3K23ac.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "CD4-H3K23ac.sort" ] }, { "page": "CD4-H3K27ac.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "CD4-H3K27ac.sort" ] }, { "page": "GSM393946.distal.p300fromTSS.txt", "title": "A bed file of p300 genomic regions", "topics": [ "GSM393946.distal.p300fromTSS" ] }, { "page": "H3K27me3.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "H3K27me3.sort" ] }, { "page": "H3K4me1.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "H3K4me1.sort" ] }, { "page": "H3K4me2.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "H3K4me2.sort" ] }, { "page": "H3K4me3.sort.txt", "title": "Histone modification ChIP-seq data in CD4", "topics": [ "H3K4me3.sort" ] }, { "page": "p300.distal.fromTSS", "title": "P300 binding sites from CD4", "topics": [ "p300.distal.fromTSS" ] }, { "page": "random.region.hg18.nop300", "title": "A bed file with the coordinates of random regions in Hg18", "topics": [ "random.region.hg18.nop300" ] }, { "page": "SVM2CRMdata", "title": "An example dataset for the SVM2CRM package", "topics": [ "SVM2CRMdata" ] }, { "page": "train_negative", "title": "Random genomic regions of ChIP-seq without enhancers", "topics": [ "train_negative" ] }, { "page": "train_positive", "title": "ChIP-seq signal in correspondence of enhancers", "topics": [ "train_positive" ] } ], "_rundeps": [], "_vignettes": [ { "source": "SVM2CRMdata.Rnw", "filename": "SVM2CRMdata.pdf", "title": "The \\Rpackage{SVM2CRMdata} Package", "engine": "utils::Sweave", "headings": [], "created": "2015-04-01 23:17:04", "modified": "2015-04-01 23:17:04", "commits": 1 } ], "_score": 3.4771212547196626, "_indexed": true, "_nocasepkg": "svm2crmdata", "_universes": [ "bioc" ], "_binaries": [ { "r": "4.7.0", "os": "linux", "version": "1.45.1", "date": "2026-11-01T09:10:05.000Z", "distro": "resolute", "commit": "7c525e5d0f66a48f9bfc666d90d91a4cff2e5930", "fileid": "https://r2.ropensci.org/7104970aea5e751cb2aa8821acc71dc8e6a30c2f8391f75ddd0d8ec3fb01827b", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41290622596" }, { "r": "4.6.1", "os": "linux", "version": "1.45.1", "date": "2026-11-01T09:09:32.000Z", "distro": "resolute", "commit": "7c525e5d0f66a48f9bfc666d90d91a4cff2e5930", "fileid": "https://r2.ropensci.org/2da11463e7aa8e9cb0554c181d9ac3c8ee7667566616d3cf0411d1ee1cc76ca8", "status": "success", "check": "WARNING", "buildurl": "https://github.com/r-universe/bioc/actions/runs/41290622596" } ] }