Introduction | Selection of most stable reference/housekeeping genes | Normalization by geometric averaging
Package: SLqPCR 1.79.0
Matthias Kohl
SLqPCR: Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH
Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH
Authors:
SLqPCR_1.79.0.tar.gz
SLqPCR_1.79.0.zip(r-4.7)SLqPCR_1.79.0.zip(r-4.6)SLqPCR_1.79.0.zip(r-4.5)
SLqPCR_1.79.0.tgz(r-4.6-any)SLqPCR_1.79.0.tgz(r-4.5-any)
SLqPCR_1.79.0.tar.gz(r-4.7-any)SLqPCR_1.79.0.tar.gz(r-4.6-any)
SLqPCR_1.79.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
SLqPCR/json (API)
| # Install 'SLqPCR' in R: |
| install.packages('SLqPCR', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Datasets:
- SLqPCRdata - SIRS-Lab inhouse qPCR data
- vandesompele - Data set of Vandesompele et al
On BioConductor:SLqPCR-1.79.0(bioc 3.24)SLqPCR-1.78.0(bioc 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
Last updated from:9613e8c680. Checks:1 ERROR, 7 NOTE, 2 OK. Indexed: yes.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 135 | ||
| linux-devel-x86_64 | NOTE | 128 | ||
| source / vignettes | OK | 125 | ||
| linux-release-x86_64 | NOTE | 175 | ||
| macos-release-arm64 | NOTE | 66 | ||
| macos-oldrel-arm64 | NOTE | 82 | ||
| windows-devel | NOTE | 61 | ||
| windows-release | NOTE | 70 | ||
| windows-oldrel | NOTE | 51 | ||
| wasm-release | OK | 80 |
Exports:geneStabMgeomMeannormPCRrelQuantPCRselectHKgenes
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Functions for analysis of real-time quantitative PCR data at SIRS-Lab GmbH | SLqPCR-package SLqPCR |
| Gene expression stability value M | geneStabM |
| Geometric Mean | geomMean |
| Normalization of real-time quantitative RT-PCR data | normPCR |
| Compute relative expression values for realtime quantitative RT-PCR data | relQuantPCR |
| Selection of reference/housekeeping genes | selectHKgenes |
| SIRS-Lab inhouse qPCR data | SLqPCRdata |
| Data set of Vandesompele et al (2002) | vandesompele |