Package: RnaSeqGeneEdgeRQL 1.37.0

Yunshun Chen

RnaSeqGeneEdgeRQL: Gene-level RNA-seq differential expression and pathway analysis using Rsubread and the edgeR quasi-likelihood pipeline

This workflow package provides, through its vignette, a complete case study analysis of an RNA-Seq experiment using the Rsubread and edgeR packages. The workflow starts from read alignment and continues on to data exploration, to differential expression and, finally, to pathway analysis. The analysis includes publication quality plots, GO and KEGG analyses, and the analysis of a expression signature as generated by a prior experiment.

Authors:Yunshun Chen, Aaron Lun, Gordon Smyth

RnaSeqGeneEdgeRQL_1.37.0.tar.gz
RnaSeqGeneEdgeRQL_1.37.0.zip(r-4.7-any)RnaSeqGeneEdgeRQL_1.37.0.zip(r-4.6-any)RnaSeqGeneEdgeRQL_1.37.0.zip(r-4.5-any)
RnaSeqGeneEdgeRQL_1.37.0.tgz(r-4.6-any)RnaSeqGeneEdgeRQL_1.37.0.tgz(r-4.5-any)
RnaSeqGeneEdgeRQL_1.37.0.tar.gz(r-4.7-any)RnaSeqGeneEdgeRQL_1.37.0.tar.gz(r-4.6-any)
RnaSeqGeneEdgeRQL_1.37.0.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION
card.svg |card.png
RnaSeqGeneEdgeRQL/json (API)

# Install 'RnaSeqGeneEdgeRQL' in R:
install.packages('RnaSeqGeneEdgeRQL', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

On BioConductor:RnaSeqGeneEdgeRQL-1.37.0(workflows 3.24)RnaSeqGeneEdgeRQL-1.36.0(workflows 3.23)

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

workflowgeneexpressionworkflowimmunooncologyworkflow

2.30 score 5 scripts 28 downloads 0 exports 67 dependencies

Last updated from:e28abd749c. Checks:2 ERROR, 7 WARNING, 1 OK. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksERROR209
linux-develWARNING198
source / vignettesERROR237
linux-releaseWARNING307
macos-releaseWARNING102
macos-oldrelWARNING113
windows-develWARNING339
windows-releaseWARNING302
windows-oldrelWARNING316
wasm-releaseOK140

Exports:

Dependencies:AnnotationDbiaskpassbase64encBiobaseBiocBaseUtilsBiocGenericsBiocManagerBiocStyleBiostringsbitbit64bitopsblobbookdownbslibcachemcaToolsclicpp11crayoncurlDBIdigestedgeRevaluatefastmapfontawesomefsgenericsglueGO.dbgplotsgtoolshighrhtmltoolshttrIRangesjquerylibjsonliteKEGGRESTKernSmoothknitrlatticelifecyclelimmalocfitmemoisemimeopensslorg.Mm.eg.dbpkgconfigpngR6rappdirsrlangrmarkdownRSQLiteS4VectorssassSeqinfostatmodsystinytexvctrsxfunXVectoryaml