Package: RnaSeqGeneEdgeRQL
Title: Gene-level RNA-seq differential expression and pathway analysis
        using Rsubread and the edgeR quasi-likelihood pipeline
Version: 1.37.0
Date: 2025-09-11
Author: Yunshun Chen, Aaron Lun, Gordon Smyth
Maintainer: Yunshun Chen <yuchen@wehi.edu.au>
Description: This workflow package provides, through its vignette, a
        complete case study analysis of an RNA-Seq experiment using the
        Rsubread and edgeR packages. The workflow starts from read
        alignment and continues on to data exploration, to differential
        expression and, finally, to pathway analysis. The analysis
        includes publication quality plots, GO and KEGG analyses, and
        the analysis of a expression signature as generated by a prior
        experiment.
Depends: R (>= 3.3.0), edgeR (>= 4.3.6), gplots, org.Mm.eg.db, GO.db,
        BiocStyle
License: Artistic-2.0
VignetteBuilder: knitr
biocViews: Workflow, GeneExpressionWorkflow, ImmunoOncologyWorkflow
Suggests: knitr, knitcitations, rmarkdown
NeedsCompilation: no
URL: http://f1000research.com/articles/5-1438/v2
Config/pak/sysreqs: cmake make libpng-dev libuv1-dev libssl-dev
        zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-04-28 12:43:13 UTC
RemoteUrl: https://github.com/bioc/RnaSeqGeneEdgeRQL
RemoteRef: HEAD
RemoteSha: e28abd749ccdab23b7a4cc1288ea7e2690d1bac9
Packaged: 2026-10-01 15:36:36 UTC; root