Package: RforProteomics 1.51.1
Laurent Gatto
RforProteomics: Companion package to the 'Using R and Bioconductor for proteomics data analysis' publication
This package contains code to illustrate the 'Using R and Bioconductor for proteomics data analysis' and 'Visualisation of proteomics data using R and Bioconductor' manuscripts. The vignettes describe the code and data needed to reproduce the examples and figures described in the paper and functionality for proteomics visualisation. It also contain various function to discover R software for mass spectrometry and proteomics.
Authors:
RforProteomics_1.51.1.tar.gz
RforProteomics_1.51.1.tar.gz(r-4.7-any)RforProteomics_1.51.1.tar.gz(r-4.6-any)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
RforProteomics/json (API)
| # Install 'RforProteomics' in R: |
| install.packages('RforProteomics', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
On BioConductor:RforProteomics-1.51.1(data/experiment 3.24)RforProteomics-1.50.0(data/experiment 3.23)
This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.
experimentdatamassspectrometrydatareproducibleresearchdatapkg
Last updated from:0445e5e782. Checks:2 ERROR, 2 WARNING. Indexed: yes.
This is a data package. Data packages may be large and do not get checked across all platforms.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| bioc-checks | ERROR | 243 | ||
| linux-devel | WARNING | 322 | ||
| source / vignettes | ERROR | 1538 | ||
| linux-release | WARNING | 330 |
Exports:analyseanalyzedetectmassSpectrometryDataPackagesmassSpectrometryPackagesnew_ionsproteomicsPackagesRforProteomicsRProtVisRProtVizspectrum
Dependencies:BHBiobaseBiocGenericsBiocManagerbiocViewsbitopsgenericsgraphRBGLRCurlRUnitXML
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Packages in a biocView | getPackagesInBiocView |
| Create, analyse and detect ions | analyse analyze detect mstut new_ions spectrum |
| Package descriptions | packageDF |
| Proteomics and MS biocView packages | massSpectrometryDataPackages massSpectrometryPackages proteomicsPackages |
| Opens the package vignettes | RforProteomics RProtVis RProtViz |
