Package: RforProteomics
Type: Package
Title: Companion package to the 'Using R and Bioconductor for
        proteomics data analysis' publication
Version: 1.51.1
Authors@R: c(person("Laurent", "Gatto", role=c("aut", "cre"),
                    email="laurent.gatto@uclouvain.be"),
             person("Sebastian", "Gibb", role="ctb",
                    email="mail@sebastiangibb.de"),
             person("Vlad", "Petyuk", role="ctb",
                    email="petyuk@gmail.com"),
             person('Thomas', 'Pedersen Lin', role='ctb',
                    email='thomasp85@gmail.com'))
Depends: R (>= 3.5)
Imports: biocViews, BiocManager
Suggests: MSnbase (>= 2.35.2), QFeatures, AnnotationDbi, rpx (>=
        2.0.3), DT, knitr, rmarkdown, BiocStyle, mzR, xcms, msdata,
        MALDIquant (>= 1.12), MALDIquantForeign, readBrukerFlexData,
        Rdisop, OrgMassSpecR, SummarizedExperiment, BRAIN, hpar, GO.db,
        org.Hs.eg.db, e1071, biomaRt, RColorBrewer, ggplot2, reshape2,
        xtable, lattice, mzID, pRoloc, pRolocdata, MSnID, msmsTests,
        msmsEDA, corrplot, beanplot, Heatplus, gplots, VennDiagram,
        protViz, genefilter, plotly, gridExtra, dplyr, lubridate,
        magick, cleaver
Description: This package contains code to illustrate the 'Using R and
        Bioconductor for proteomics data analysis' and 'Visualisation
        of proteomics data using R and Bioconductor' manuscripts. The
        vignettes describe the code and data needed to reproduce the
        examples and figures described in the paper and functionality
        for proteomics visualisation. It also contain various function
        to discover R software for mass spectrometry and proteomics.
URL: http://lgatto.github.com/RforProteomics/
biocViews: ExperimentData, MassSpectrometryData, ReproducibleResearch
License: Artistic-2.0
VignetteBuilder: knitr
Encoding: UTF-8
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: make libxml2-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-23 20:27:31 UTC
RemoteUrl: https://github.com/bioc/RforProteomics
RemoteRef: HEAD
RemoteSha: 0445e5e78285d385ad6f33c3a9f8516254b62b7d
NeedsCompilation: no
Packaged: 2026-10-10 10:54:09 UTC; root
Author: Laurent Gatto [aut, cre],
  Sebastian Gibb [ctb],
  Vlad Petyuk [ctb],
  Thomas Pedersen Lin [ctb]
Maintainer: Laurent Gatto <laurent.gatto@uclouvain.be>