Package: Rbwa 1.11.0

Jean-Philippe Fortin

Rbwa: R wrapper for BWA-backtrack and BWA-MEM aligners

Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.

Authors:Jean-Philippe Fortin [aut, cre]

Rbwa_1.11.0.tar.gz

Rbwa_1.11.0.tgz(r-4.4-x86_64)Rbwa_1.11.0.tgz(r-4.4-arm64)Rbwa_1.11.0.tgz(r-4.3-x86_64)Rbwa_1.11.0.tgz(r-4.3-arm64)
Rbwa_1.11.0.tar.gz(r-4.5-noble)Rbwa_1.11.0.tar.gz(r-4.4-noble)
Rbwa.pdf |Rbwa.html✨
Rbwa/json (API)
NEWS

# Install 'Rbwa' in R:
install.packages('Rbwa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/crisprverse/rbwa/issues

On BioConductor:Rbwa-1.11.0(bioc 3.21)Rbwa-1.10.0(bioc 3.20)

sequencingalignmentbwabwa-memdna-sequencesdna-sequencing

4.26 score 1 packages 10 scripts 154 downloads 5 exports 0 dependencies

Last updated 2 months agofrom:441c6985bb. Checks:ERROR: 1 WARNING: 5. Indexed: yes.

TargetResultDate
Doc / VignettesFAILDec 18 2024
R-4.5-linux-x86_64WARNINGDec 18 2024
R-4.4-mac-x86_64WARNINGDec 18 2024
R-4.4-mac-aarch64WARNINGDec 18 2024
R-4.3-mac-x86_64WARNINGDec 18 2024
R-4.3-mac-aarch64WARNINGDec 18 2024

Exports:bwa_alnbwa_build_indexbwa_membwa_samxa2multi

Dependencies:

An introduction to Rbwa

Jean-Philippe Fortin

Rendered fromRbwa.Rmdusingknitr::rmarkdownon Dec 18 2024.

Last update: 2022-03-22
Started: 2022-01-21