Package: Rbwa 1.9.0
Jean-Philippe Fortin
Rbwa: R wrapper for BWA-backtrack and BWA-MEM aligners
Provides an R wrapper for BWA alignment algorithms. Both BWA-backtrack and BWA-MEM are available. Convenience function to build a BWA index from a reference genome is also provided. Currently not supported for Windows machines.
Authors:
Rbwa_1.9.0.tar.gz
Rbwa_1.9.0.tgz(r-4.4-arm64)Rbwa_1.9.0.tgz(r-4.4-x86_64)Rbwa_1.9.0.tgz(r-4.3-arm64)Rbwa_1.9.0.tgz(r-4.3-x86_64)
Rbwa_1.9.0.tar.gz(r-4.5-noble)Rbwa_1.9.0.tar.gz(r-4.4-noble)
Rbwa.pdf |Rbwa.html✨
Rbwa/json (API)
NEWS
| # Install 'Rbwa' in R: |
| install.packages('Rbwa', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/crisprverse/rbwa/issues
On BioConductor:Rbwa-1.9.0(bioc 3.20)Rbwa-1.8.0(bioc 3.19)
Last updated 2 months agofrom:27c701763a
Exports:bwa_alnbwa_build_indexbwa_membwa_samxa2multi
Dependencies:
Vignettes and/or manual for this package failed to build, some documents may be unavailable. Please inspect thebuild logs for more information.
An introduction to Rbwa
Rendered fromRbwa.Rmdusingknitr::rmarkdownon Jun 17 2024.Last update: 2022-03-22
Started: 2022-01-21
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| R wrapper to run BWA alignment tool BWA-backtrack | bwa_aln |
| R wrapper to create BWA index files | bwa_build_index |
| R wrapper to run BWA alignment tool BWA-MEM | bwa_mem |
| R wrapper to convert bwa aln output to SAM format | bwa_sam |
| Unpack multiple alignments stored in BWA output | xa2multi |
