{
  "_id": "6a497c046d67900babdf7297",
  "Package": "Rbwa",
  "Version": "1.17.0",
  "Date": "2026-04-02",
  "Title": "R wrapper for BWA-backtrack and BWA-MEM aligners",
  "Authors@R": "c(\nperson(\"Jean-Philippe\", \"Fortin\", email = \"fortin946@gmail.com\", role = c(\"aut\", \"cre\")))",
  "SystemRequirements": "GNU make",
  "Description": "Provides an R wrapper for BWA alignment algorithms. Both\nBWA-backtrack and BWA-MEM are available. Convenience function\nto build a BWA index from a reference genome is also provided.\nCurrently not supported for Windows machines.",
  "License": "MIT + file LICENSE",
  "URL": "https://github.com/Jfortin1/Rbwa",
  "BugReports": "https://github.com/crisprVerse/Rbwa/issues",
  "biocViews": "Sequencing, Alignment",
  "VignetteBuilder": "knitr",
  "RoxygenNote": "7.1.2",
  "OS_type": "unix",
  "Config/Bioconductor/UnsupportedPlatforms": "windows",
  "Config/pak/sysreqs": "make",
  "Repository": "https://bioc.r-universe.dev",
  "Date/Publication": "2026-04-28 12:57:57 UTC",
  "RemoteUrl": "https://github.com/bioc/Rbwa",
  "RemoteRef": "HEAD",
  "RemoteSha": "865761423b25688f10e4f17af076e398b3c2bbc3",
  "NeedsCompilation": "yes",
  "Packaged": {
    "Date": "2026-06-23 19:17:06 UTC",
    "User": "root"
  },
  "Author": "Jean-Philippe Fortin [aut, cre]",
  "Maintainer": "Jean-Philippe Fortin <fortin946@gmail.com>",
  "_user": "bioc",
  "_type": "src",
  "_file": "Rbwa_1.17.0.tar.gz",
  "_fileid": "https://r2.ropensci.org/327a72e1f7bbd50a776a01ca61da232b318e5228adc32e7907a06c103c469b8f",
  "_filesize": 377634,
  "_sha256": "327a72e1f7bbd50a776a01ca61da232b318e5228adc32e7907a06c103c469b8f",
  "_expires": "2026-10-12T21:32:50.000Z",
  "_created": "2026-06-23T19:17:06.000Z",
  "_published": "2026-07-04T21:32:52.664Z",
  "_bioccheck": {
    "error": 0,
    "warning": 1,
    "note": 5
  },
  "_host": "GitHub-Actions",
  "_buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077",
  "_status": "failure",
  "_upstream": "https://github.com/bioc/Rbwa",
  "_commit": {
    "id": "865761423b25688f10e4f17af076e398b3c2bbc3",
    "author": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "committer": "A Wokaty <andres.wokaty@sph.cuny.edu>",
    "message": "bump x.y.z version to odd y following creation of RELEASE_3_23 branch\n",
    "time": 1777381077
  },
  "_maintainer": {
    "name": "Jean-Philippe Fortin",
    "email": "fortin946@gmail.com",
    "login": "jfortin1",
    "bluesky": "@jp-fortin.bsky.social",
    "linkedin": "in/jean-philippe-fortin-98a68a47",
    "description": "Freelancer | Father of the @crisprVerse ",
    "uuid": 2328424
  },
  "_distro": "resolute",
  "_jobs": [
    {
      "job": 85168717594,
      "time": 156,
      "config": "bioc-checks",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7831050341"
    },
    {
      "job": 85168717708,
      "time": 165,
      "config": "linux-devel-arm64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7831054719"
    },
    {
      "job": 85168717691,
      "time": 193,
      "config": "linux-devel-x86_64",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": "7831064076"
    },
    {
      "job": 85168717885,
      "time": 145,
      "config": "linux-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7831047537"
    },
    {
      "job": 85168717887,
      "time": 188,
      "config": "linux-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7831062205"
    },
    {
      "job": 85168717736,
      "time": 75,
      "config": "macos-oldrel-arm64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7831173538"
    },
    {
      "job": 85168717854,
      "time": 240,
      "config": "macos-oldrel-x86_64",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": "7831184529"
    },
    {
      "job": 85168717811,
      "time": 95,
      "config": "macos-release-arm64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7831173912"
    },
    {
      "job": 85168717683,
      "time": 265,
      "config": "macos-release-x86_64",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": "7831205840"
    },
    {
      "job": 85168717480,
      "time": 203,
      "config": "source",
      "r": "4.6.0",
      "check": "ERROR",
      "artifact": "7830990507"
    },
    {
      "job": 85168717768,
      "time": 118,
      "config": "wasm-release",
      "r": "4.6.0",
      "check": "OK",
      "artifact": "7831036390"
    },
    {
      "job": 85168717746,
      "time": 61,
      "config": "windows-devel",
      "r": "4.7.0",
      "check": "WARNING",
      "artifact": ""
    },
    {
      "job": 85168717762,
      "time": 66,
      "config": "windows-oldrel",
      "r": "4.5.3",
      "check": "WARNING",
      "artifact": ""
    },
    {
      "job": 85168717798,
      "time": 69,
      "config": "windows-release",
      "r": "4.6.0",
      "check": "WARNING",
      "artifact": ""
    }
  ],
  "_registered": true,
  "_dependencies": [
    {
      "package": "R",
      "version": ">= 4.1",
      "role": "Depends"
    },
    {
      "package": "testthat",
      "role": "Suggests"
    },
    {
      "package": "BiocStyle",
      "role": "Suggests"
    },
    {
      "package": "knitr",
      "role": "Suggests"
    },
    {
      "package": "rmarkdown",
      "role": "Suggests"
    }
  ],
  "_owner": "bioc",
  "_selfowned": true,
  "_usedby": 1,
  "_updates": [
    {
      "week": "2025-44",
      "n": 2
    },
    {
      "week": "2026-09",
      "n": 2
    },
    {
      "week": "2026-14",
      "n": 3
    },
    {
      "week": "2026-18",
      "n": 2
    }
  ],
  "_tags": [],
  "_bioc": [
    {
      "branch": "devel",
      "version": "1.17.0",
      "bioc": "3.24"
    },
    {
      "branch": "release",
      "version": "1.16.0",
      "bioc": "3.23"
    }
  ],
  "_topics": [
    "sequencing",
    "alignment",
    "bwa",
    "bwa-mem",
    "dna-sequences",
    "dna-sequencing"
  ],
  "_stars": 1,
  "_contributors": [
    {
      "user": "jwokaty",
      "count": 14,
      "uuid": 1744257
    },
    {
      "user": "jfortin1",
      "count": 13,
      "uuid": 2328424
    },
    {
      "user": "martin-g",
      "count": 2,
      "uuid": 232002
    },
    {
      "user": "nturaga",
      "count": 2,
      "uuid": 2746443
    }
  ],
  "_userbio": {
    "uuid": 2286807,
    "type": "organization",
    "name": "Bioconductor",
    "followers": 441,
    "description": "Software for the analysis and comprehension of high-throughput genomic data"
  },
  "_devurl": "https://github.com/crisprverse/rbwa",
  "_searchresults": 13,
  "_rbuild": "4.6.0",
  "_assets": [
    "extra/citation.cff",
    "extra/contents.json",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/Rbwa.html",
    "LICENSE",
    "manual.pdf"
  ],
  "_homeurl": "https://github.com/crisprverse/rbwa",
  "_realowner": "bioc",
  "_cranurl": false,
  "_exports": [
    "bwa_aln",
    "bwa_build_index",
    "bwa_mem",
    "bwa_sam",
    "xa2multi"
  ],
  "_help": [
    {
      "page": "bwa_aln",
      "title": "R wrapper to run BWA alignment tool BWA-backtrack",
      "topics": [
        "bwa_aln"
      ]
    },
    {
      "page": "bwa_build_index",
      "title": "R wrapper to create BWA index files",
      "topics": [
        "bwa_build_index"
      ]
    },
    {
      "page": "bwa_mem",
      "title": "R wrapper to run BWA alignment tool BWA-MEM",
      "topics": [
        "bwa_mem"
      ]
    },
    {
      "page": "bwa_sam",
      "title": "R wrapper to convert bwa aln output to SAM format",
      "topics": [
        "bwa_sam"
      ]
    },
    {
      "page": "xa2multi",
      "title": "Unpack multiple alignments stored in BWA output",
      "topics": [
        "xa2multi"
      ]
    }
  ],
  "_rundeps": [],
  "_vignettes": [
    {
      "source": "Rbwa.Rmd",
      "filename": "Rbwa.html",
      "title": "An introduction to Rbwa",
      "author": "Jean-Philippe Fortin",
      "engine": "knitr::rmarkdown",
      "headings": [
        "Introduction",
        "Installation",
        "Overview",
        "Build a reference index with bwa_build_index",
        "Aligment with bwa_aln",
        "Creating a SAM file",
        "Creating a SAM file with secondary alignments",
        "Aligment with bwa_mem",
        "Session info",
        "References"
      ],
      "created": "2022-01-21 16:49:04",
      "modified": "2022-03-22 18:03:19",
      "commits": 2
    }
  ],
  "_score": 4.670245853074125,
  "_indexed": true,
  "_nocasepkg": "rbwa",
  "_universes": [
    "bioc",
    "jfortin1",
    "crisprverse"
  ],
  "_binaries": [
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-06-23T19:20:00.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/44fea5c4683fd06c7920cc4726b4070d73692b266b51e48df3d437d4dce83809",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.7.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-06-23T19:20:14.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/ff7e2a684f1b86354e58bdd4aecfaf86039d5886024a1e31d3338fe011bde942",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-06-23T19:19:40.000Z",
      "distro": "resolute",
      "arch": "aarch64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/42d974b231d08e49a1b3077c07e30d3af0e85f52a91174a9a2479ad3fd1ce3c8",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.6.0",
      "os": "linux",
      "version": "1.17.0",
      "date": "2026-06-23T19:20:17.000Z",
      "distro": "resolute",
      "arch": "x86_64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/dcc7a5cbc8399d1023485f80282594048330e3947878de404858a57afe564a60",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-06-23T19:25:24.000Z",
      "arch": "aarch64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/40e8e6887d590e80de3944a47aed49cc5ee7802eacea6858778de116da5d4fb0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.5.3",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-06-23T19:25:22.000Z",
      "arch": "x86_64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/9f0cf82d43cabde89c1bbc43fdbe7ef1dbf55d269dcbbf966768212a269cf3a0",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-06-23T19:25:22.000Z",
      "arch": "aarch64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/a10005aa860ea3092ae183888cd4c3910cf17da155e0b34c885bf2a1e092e192",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.6.0",
      "os": "mac",
      "version": "1.17.0",
      "date": "2026-06-23T19:26:12.000Z",
      "arch": "x86_64",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/9f45174a1eabde618f219b59e9eaa7e7603fd780364d86a6dd079bc8c6b44d6d",
      "status": "success",
      "check": "WARNING",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    },
    {
      "r": "4.6.0",
      "os": "wasm",
      "version": "1.17.0",
      "date": "2026-06-23T19:19:20.000Z",
      "arch": "emscripten",
      "commit": "865761423b25688f10e4f17af076e398b3c2bbc3",
      "fileid": "https://r2.ropensci.org/0ce22277268386571e38739df58ea608fc48769d6375578a3856f6dde4b93ce4",
      "status": "success",
      "buildurl": "https://github.com/r-universe/bioc/actions/runs/28050605077"
    }
  ]
}