Package: Rbowtie 1.47.0
Michael Stadler
Rbowtie: R bowtie wrapper
This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.
Authors:
Rbowtie_1.47.0.tar.gz
Rbowtie_1.47.0.zip(r-4.5)Rbowtie_1.47.0.zip(r-4.4)Rbowtie_1.47.0.zip(r-4.3)
Rbowtie_1.47.0.tgz(r-4.4-x86_64)Rbowtie_1.47.0.tgz(r-4.4-arm64)Rbowtie_1.47.0.tgz(r-4.3-x86_64)Rbowtie_1.47.0.tgz(r-4.3-arm64)
Rbowtie_1.47.0.tar.gz(r-4.5-noble)Rbowtie_1.47.0.tar.gz(r-4.4-noble)
Rbowtie.pdf |Rbowtie.html✨
Rbowtie/json (API)
NEWS
| # Install 'Rbowtie' in R: |
| install.packages('Rbowtie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/fmicompbio/rbowtie/issues
On BioConductor:Rbowtie-1.47.0(bioc 3.21)Rbowtie-1.46.0(bioc 3.20)
Last updated 2 months agofrom:1ccecf4c62. Checks:OK: 1 NOTE: 4 WARNING: 4. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Nov 30 2024 |
| R-4.5-win-x86_64 | NOTE | Nov 30 2024 |
| R-4.5-linux-x86_64 | NOTE | Nov 30 2024 |
| R-4.4-win-x86_64 | NOTE | Nov 30 2024 |
| R-4.4-mac-x86_64 | WARNING | Nov 30 2024 |
| R-4.4-mac-aarch64 | WARNING | Nov 30 2024 |
| R-4.3-win-x86_64 | NOTE | Nov 30 2024 |
| R-4.3-mac-x86_64 | WARNING | Nov 30 2024 |
| R-4.3-mac-aarch64 | WARNING | Nov 30 2024 |
Exports:bowtiebowtie_buildbowtie_build_usagebowtie_usagebowtie_versionSpliceMap
Dependencies:
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| R bowtie wrapper | Rbowtie-package Rbowtie |
| Interface to bowtie | bowtie bowtie_build bowtie_build_usage bowtie_usage bowtie_version |
| Interface to SpliceMap | SpliceMap |
