Package: Rbowtie 1.53.0

Michael Stadler

Rbowtie: R bowtie wrapper

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Authors:Florian Hahne [aut], Anita Lerch [aut], Michael Stadler [aut, cre]

Rbowtie_1.53.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
Rbowtie/json (API)
NEWS

# Install 'Rbowtie' in R:
install.packages('Rbowtie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/fmicompbio/rbowtie/issues

On BioConductor:Rbowtie-1.53.0(bioc 3.24)Rbowtie-1.52.0(bioc 3.23)

sequencingalignment

6.68 score 1 stars 8 packages 25 scripts 834 downloads 1 mentions 6 exports 0 dependencies

Last updated from:7fc4e20ff1. Checks:7 WARNING, 5 NOTE, 1 OK, 1 FAIL. Indexed: yes.

TargetResultTimeFilesSyslog
bioc-checksWARNING206
linux-devel-arm64NOTE173
linux-devel-x86_64NOTE239
source / vignettesOK293
linux-release-arm64WARNING226
linux-release-x86_64WARNING190
macos-release-arm64WARNING130
macos-release-x86_64WARNING218
macos-oldrel-arm64WARNING151
macos-oldrel-x86_64WARNING251
windows-develNOTE182
windows-releaseNOTE154
windows-oldrelNOTE156
wasm-releaseFAIL97

Exports:bowtiebowtie_buildbowtie_build_usagebowtie_usagebowtie_versionSpliceMap

Dependencies:

An introduction to Rbowtie

Michael Stadler, Dimos Gaidatzis, Anita Lerch

Rendered fromRbowtie-Overview.Rmdusingknitr::rmarkdownon May 30 2026.

Last update: 2018-07-19
Started: 2018-01-06

Readme and manuals

Help Manual

Help pageTopics
R bowtie wrapperRbowtie-package Rbowtie
Interface to bowtiebowtie bowtie_build bowtie_build_usage bowtie_usage bowtie_version
Interface to SpliceMapSpliceMap