Package: Rbowtie 1.45.0

Michael Stadler

Rbowtie: R bowtie wrapper

This package provides an R wrapper around the popular bowtie short read aligner and around SpliceMap, a de novo splice junction discovery and alignment tool. The package is used by the QuasR bioconductor package. We recommend to use the QuasR package instead of using Rbowtie directly.

Authors:Florian Hahne [aut], Anita Lerch [aut], Michael Stadler [aut, cre]

Rbowtie_1.45.0.tar.gz
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Rbowtie.pdf |Rbowtie.html✨
Rbowtie/json (API)
NEWS

# Install 'Rbowtie' in R:
install.packages('Rbowtie', repos = c('https://bioc.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/fmicompbio/rbowtie/issues

On BioConductor:Rbowtie-1.45.0(bioc 3.20)Rbowtie-1.44.0(bioc 3.19)

bioconductor-package

6 exports 2.46 score 0 dependencies 8 dependents 1 mentions

Last updated 2 months agofrom:46a17635bc

Exports:bowtiebowtie_buildbowtie_build_usagebowtie_usagebowtie_versionSpliceMap

Dependencies:

An introduction to Rbowtie

Michael Stadler, Dimos Gaidatzis, Anita Lerch

Rendered fromRbowtie-Overview.Rmdusingknitr::rmarkdownon Jul 03 2024.

Last update: 2018-07-19
Started: 2018-01-06

Readme and manuals

Help Manual

Help pageTopics
R bowtie wrapperRbowtie-package Rbowtie
Interface to bowtiebowtie bowtie_build bowtie_build_usage bowtie_usage bowtie_version
Interface to SpliceMapSpliceMap