NEWS

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Rbowtie 1.31.1

NEW FEATURES

• updated bowtie to version 1.3.0 (bugfixes, improved compiler support, removed support for colorspace alignments)

Rbowtie 1.27.1

NEW FEATURES

• updated bowtie to version 1.2.3 (now also supports bowtie2 indices and compilation on intel, gcc 8 and gcc 9)

Rbowtie 1.23.2

NEW FEATURES

• updated bowtie to version 1.2.2.p1 + fixes from github (up to master branch commit 58c6ac9 from Sep 5, 2018, and unmerged pull request #74)

Rbowtie 1.7.9

NEW FEATURES

• updated bowtie to version 1.1.1 (currently not using long index feature, renaming bowtie-align-s and bowtie-build-s to bowtie and bowtie-build)

Rbowtie 1.4.1

NEW FEATURES

• updated bowtie to version 1.0.1 (patched in 1.5.2/1.5.3 to compile on OS X 10.9)

Rbowtie 1.1.1

NEW FEATURES

• updated bowtie to version 1.0.0

Rbowtie 1.0.0

INITIAL RELEASE

• bowtie version 0.12.8
• SpliceMap version 3.3.5.2 modified

BUG FIXES

• Several bug fixes and modifications in the source code of SpliceMap for integration in Rbowtie/QuasR.